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A Decentralized ComBat Algorithm and Applications to Functional Network Connectivity
Recent studies showed that working with neuroimage data collected from different research facilities or locations may incur additional source dependency, affecting the overall statistical power. This problem can be mitigated with data harmonization approaches. Recently, the ComBat method has become...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8965063/ https://www.ncbi.nlm.nih.gov/pubmed/35370895 http://dx.doi.org/10.3389/fneur.2022.826734 |
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author | Bostami, Biozid Hillary, Frank G. van der Horn, Harm Jan van der Naalt, Joukje Calhoun, Vince D. Vergara, Victor M. |
author_facet | Bostami, Biozid Hillary, Frank G. van der Horn, Harm Jan van der Naalt, Joukje Calhoun, Vince D. Vergara, Victor M. |
author_sort | Bostami, Biozid |
collection | PubMed |
description | Recent studies showed that working with neuroimage data collected from different research facilities or locations may incur additional source dependency, affecting the overall statistical power. This problem can be mitigated with data harmonization approaches. Recently, the ComBat method has become commonly adopted for various neuroimage modalities. While open neuroimaging datasets are becoming more common, a substantial amount of data is still unable to be shared for various reasons. In addition, current approaches require moving all the data to a central location, which requires additional resources and creates redundant copies of the same datasets. To address these issues, we propose a decentralized harmonization approach that does not create redundant copies of the original datasets and performs remote operations on the datasets separately without sharing any individual subject data, ensuring a certain level of privacy and reducing regulatory hurdles. We proposed a novel approach called “Decentralized ComBat” which can harmonize datasets separately without combining the datasets. We tested our model by harmonizing functional network connectivity datasets from two traumatic brain injury studies in a decentralized way. Also, we used simulations to analyze the performance and scalability of our model when the number of data collection sites increases. We compare the output with centralized ComBat and show that the proposed approach produces similar results, increasing the sensitivity of the functional network connectivity analysis and validating our approach. Simulations show that our model can be easily scaled to many more datasets based on the requirement. In sum, we believe this provides a powerful tool, further complementing open data and allowing for integrating public and private datasets. |
format | Online Article Text |
id | pubmed-8965063 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-89650632022-03-31 A Decentralized ComBat Algorithm and Applications to Functional Network Connectivity Bostami, Biozid Hillary, Frank G. van der Horn, Harm Jan van der Naalt, Joukje Calhoun, Vince D. Vergara, Victor M. Front Neurol Neurology Recent studies showed that working with neuroimage data collected from different research facilities or locations may incur additional source dependency, affecting the overall statistical power. This problem can be mitigated with data harmonization approaches. Recently, the ComBat method has become commonly adopted for various neuroimage modalities. While open neuroimaging datasets are becoming more common, a substantial amount of data is still unable to be shared for various reasons. In addition, current approaches require moving all the data to a central location, which requires additional resources and creates redundant copies of the same datasets. To address these issues, we propose a decentralized harmonization approach that does not create redundant copies of the original datasets and performs remote operations on the datasets separately without sharing any individual subject data, ensuring a certain level of privacy and reducing regulatory hurdles. We proposed a novel approach called “Decentralized ComBat” which can harmonize datasets separately without combining the datasets. We tested our model by harmonizing functional network connectivity datasets from two traumatic brain injury studies in a decentralized way. Also, we used simulations to analyze the performance and scalability of our model when the number of data collection sites increases. We compare the output with centralized ComBat and show that the proposed approach produces similar results, increasing the sensitivity of the functional network connectivity analysis and validating our approach. Simulations show that our model can be easily scaled to many more datasets based on the requirement. In sum, we believe this provides a powerful tool, further complementing open data and allowing for integrating public and private datasets. Frontiers Media S.A. 2022-03-15 /pmc/articles/PMC8965063/ /pubmed/35370895 http://dx.doi.org/10.3389/fneur.2022.826734 Text en Copyright © 2022 Bostami, Hillary, van der Horn, van der Naalt, Calhoun and Vergara. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Neurology Bostami, Biozid Hillary, Frank G. van der Horn, Harm Jan van der Naalt, Joukje Calhoun, Vince D. Vergara, Victor M. A Decentralized ComBat Algorithm and Applications to Functional Network Connectivity |
title | A Decentralized ComBat Algorithm and Applications to Functional Network Connectivity |
title_full | A Decentralized ComBat Algorithm and Applications to Functional Network Connectivity |
title_fullStr | A Decentralized ComBat Algorithm and Applications to Functional Network Connectivity |
title_full_unstemmed | A Decentralized ComBat Algorithm and Applications to Functional Network Connectivity |
title_short | A Decentralized ComBat Algorithm and Applications to Functional Network Connectivity |
title_sort | decentralized combat algorithm and applications to functional network connectivity |
topic | Neurology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8965063/ https://www.ncbi.nlm.nih.gov/pubmed/35370895 http://dx.doi.org/10.3389/fneur.2022.826734 |
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