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Construction and validation of m(6)A RNA methylation regulators associated prognostic model for gastrointestinal cancer

N6‐methyladenosine (m(6)A) RNA methylation is correlated with carcinogenesis and dynamically possessed through the m(6)A RNA methylation regulators. This paper aimed to explore 13 m(6)A RNA methylation regulators' role in gastrointestinal cancer (GIC) and determine the risk model and prognosis...

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Autores principales: Miao, Yandong, Su, Bin, Tang, Xiaolong, Wang, Jiangtao, Quan, Wuxia, Chen, Yonggang, Mi, Denghai
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8965361/
https://www.ncbi.nlm.nih.gov/pubmed/35174637
http://dx.doi.org/10.1049/syb2.12040
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author Miao, Yandong
Su, Bin
Tang, Xiaolong
Wang, Jiangtao
Quan, Wuxia
Chen, Yonggang
Mi, Denghai
author_facet Miao, Yandong
Su, Bin
Tang, Xiaolong
Wang, Jiangtao
Quan, Wuxia
Chen, Yonggang
Mi, Denghai
author_sort Miao, Yandong
collection PubMed
description N6‐methyladenosine (m(6)A) RNA methylation is correlated with carcinogenesis and dynamically possessed through the m(6)A RNA methylation regulators. This paper aimed to explore 13 m(6)A RNA methylation regulators' role in gastrointestinal cancer (GIC) and determine the risk model and prognosis value of m(6)A RNA methylation regulators in GIC. We used several bioinformatics methods to identify the differential expression of m(6)A RNA methylation regulators in GIC, constructed a prognostic model, and carried out functional enrichment analysis. Eleven of 13 m(6)A RNA methylation regulators were differentially expressed in different clinicopathological characteristics of GIC, and m(6)A RNA methylation regulators were nearly associated with GIC. We constructed a risk model based on five m(6)A RNA methylation regulators (METTL3, FTO, YTHDF1, ZC3H13, and WTAP); the risk score is an independent prognosis biomarker. Moreover, the five m(6)A RNA methylation regulators can also forecast the 1‐, 3‐ and 5‐year overall survival through a nomogram. Furthermore, four hallmarks of oxidative phosphorylation, glycolysis, fatty acid metabolism, and cholesterol homoeostasis gene sets were significantly enriched in GIC. m(6)A RNA methylation regulators were related to the malignant clinicopathological characteristics of GIC and may be used for prognostic stratification and development of therapeutic strategies.
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spelling pubmed-89653612022-04-05 Construction and validation of m(6)A RNA methylation regulators associated prognostic model for gastrointestinal cancer Miao, Yandong Su, Bin Tang, Xiaolong Wang, Jiangtao Quan, Wuxia Chen, Yonggang Mi, Denghai IET Syst Biol Original Research N6‐methyladenosine (m(6)A) RNA methylation is correlated with carcinogenesis and dynamically possessed through the m(6)A RNA methylation regulators. This paper aimed to explore 13 m(6)A RNA methylation regulators' role in gastrointestinal cancer (GIC) and determine the risk model and prognosis value of m(6)A RNA methylation regulators in GIC. We used several bioinformatics methods to identify the differential expression of m(6)A RNA methylation regulators in GIC, constructed a prognostic model, and carried out functional enrichment analysis. Eleven of 13 m(6)A RNA methylation regulators were differentially expressed in different clinicopathological characteristics of GIC, and m(6)A RNA methylation regulators were nearly associated with GIC. We constructed a risk model based on five m(6)A RNA methylation regulators (METTL3, FTO, YTHDF1, ZC3H13, and WTAP); the risk score is an independent prognosis biomarker. Moreover, the five m(6)A RNA methylation regulators can also forecast the 1‐, 3‐ and 5‐year overall survival through a nomogram. Furthermore, four hallmarks of oxidative phosphorylation, glycolysis, fatty acid metabolism, and cholesterol homoeostasis gene sets were significantly enriched in GIC. m(6)A RNA methylation regulators were related to the malignant clinicopathological characteristics of GIC and may be used for prognostic stratification and development of therapeutic strategies. John Wiley and Sons Inc. 2022-02-17 /pmc/articles/PMC8965361/ /pubmed/35174637 http://dx.doi.org/10.1049/syb2.12040 Text en © 2022 The Authors. IET Systems Biology published by John Wiley & Sons Ltd on behalf of The Institution of Engineering and Technology. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ (https://creativecommons.org/licenses/by-nc-nd/4.0/) License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.
spellingShingle Original Research
Miao, Yandong
Su, Bin
Tang, Xiaolong
Wang, Jiangtao
Quan, Wuxia
Chen, Yonggang
Mi, Denghai
Construction and validation of m(6)A RNA methylation regulators associated prognostic model for gastrointestinal cancer
title Construction and validation of m(6)A RNA methylation regulators associated prognostic model for gastrointestinal cancer
title_full Construction and validation of m(6)A RNA methylation regulators associated prognostic model for gastrointestinal cancer
title_fullStr Construction and validation of m(6)A RNA methylation regulators associated prognostic model for gastrointestinal cancer
title_full_unstemmed Construction and validation of m(6)A RNA methylation regulators associated prognostic model for gastrointestinal cancer
title_short Construction and validation of m(6)A RNA methylation regulators associated prognostic model for gastrointestinal cancer
title_sort construction and validation of m(6)a rna methylation regulators associated prognostic model for gastrointestinal cancer
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8965361/
https://www.ncbi.nlm.nih.gov/pubmed/35174637
http://dx.doi.org/10.1049/syb2.12040
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