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AI-Driven Synthetic Route Design Incorporated with Retrosynthesis Knowledge

[Image: see text] Computer-aided synthesis planning (CASP) aims to assist chemists in performing retrosynthetic analysis for which they utilize their experiments, intuition, and knowledge. Recent breakthroughs in machine learning (ML) techniques, including deep neural networks, have significantly im...

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Autores principales: Ishida, Shoichi, Terayama, Kei, Kojima, Ryosuke, Takasu, Kiyosei, Okuno, Yasushi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2022
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8965881/
https://www.ncbi.nlm.nih.gov/pubmed/35258953
http://dx.doi.org/10.1021/acs.jcim.1c01074
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author Ishida, Shoichi
Terayama, Kei
Kojima, Ryosuke
Takasu, Kiyosei
Okuno, Yasushi
author_facet Ishida, Shoichi
Terayama, Kei
Kojima, Ryosuke
Takasu, Kiyosei
Okuno, Yasushi
author_sort Ishida, Shoichi
collection PubMed
description [Image: see text] Computer-aided synthesis planning (CASP) aims to assist chemists in performing retrosynthetic analysis for which they utilize their experiments, intuition, and knowledge. Recent breakthroughs in machine learning (ML) techniques, including deep neural networks, have significantly improved data-driven synthetic route designs without human intervention. However, learning chemical knowledge by ML for practical synthesis planning has not yet been adequately achieved and remains a challenging problem. In this study, we developed a data-driven CASP application integrated with various portions of retrosynthesis knowledge called “ReTReK” that introduces the knowledge as adjustable parameters into the evaluation of promising search directions. The experimental results showed that ReTReK successfully searched synthetic routes based on the specified retrosynthesis knowledge, indicating that the synthetic routes searched with the knowledge were preferred to those without the knowledge. The concept of integrating retrosynthesis knowledge as adjustable parameters into a data-driven CASP application is expected to enhance the performance of both existing data-driven CASP applications and those under development.
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spelling pubmed-89658812022-03-30 AI-Driven Synthetic Route Design Incorporated with Retrosynthesis Knowledge Ishida, Shoichi Terayama, Kei Kojima, Ryosuke Takasu, Kiyosei Okuno, Yasushi J Chem Inf Model [Image: see text] Computer-aided synthesis planning (CASP) aims to assist chemists in performing retrosynthetic analysis for which they utilize their experiments, intuition, and knowledge. Recent breakthroughs in machine learning (ML) techniques, including deep neural networks, have significantly improved data-driven synthetic route designs without human intervention. However, learning chemical knowledge by ML for practical synthesis planning has not yet been adequately achieved and remains a challenging problem. In this study, we developed a data-driven CASP application integrated with various portions of retrosynthesis knowledge called “ReTReK” that introduces the knowledge as adjustable parameters into the evaluation of promising search directions. The experimental results showed that ReTReK successfully searched synthetic routes based on the specified retrosynthesis knowledge, indicating that the synthetic routes searched with the knowledge were preferred to those without the knowledge. The concept of integrating retrosynthesis knowledge as adjustable parameters into a data-driven CASP application is expected to enhance the performance of both existing data-driven CASP applications and those under development. American Chemical Society 2022-03-08 2022-03-28 /pmc/articles/PMC8965881/ /pubmed/35258953 http://dx.doi.org/10.1021/acs.jcim.1c01074 Text en © 2022 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by-nc-nd/4.0/Permits non-commercial access and re-use, provided that author attribution and integrity are maintained; but does not permit creation of adaptations or other derivative works (https://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Ishida, Shoichi
Terayama, Kei
Kojima, Ryosuke
Takasu, Kiyosei
Okuno, Yasushi
AI-Driven Synthetic Route Design Incorporated with Retrosynthesis Knowledge
title AI-Driven Synthetic Route Design Incorporated with Retrosynthesis Knowledge
title_full AI-Driven Synthetic Route Design Incorporated with Retrosynthesis Knowledge
title_fullStr AI-Driven Synthetic Route Design Incorporated with Retrosynthesis Knowledge
title_full_unstemmed AI-Driven Synthetic Route Design Incorporated with Retrosynthesis Knowledge
title_short AI-Driven Synthetic Route Design Incorporated with Retrosynthesis Knowledge
title_sort ai-driven synthetic route design incorporated with retrosynthesis knowledge
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8965881/
https://www.ncbi.nlm.nih.gov/pubmed/35258953
http://dx.doi.org/10.1021/acs.jcim.1c01074
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