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AI-Driven Synthetic Route Design Incorporated with Retrosynthesis Knowledge
[Image: see text] Computer-aided synthesis planning (CASP) aims to assist chemists in performing retrosynthetic analysis for which they utilize their experiments, intuition, and knowledge. Recent breakthroughs in machine learning (ML) techniques, including deep neural networks, have significantly im...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2022
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8965881/ https://www.ncbi.nlm.nih.gov/pubmed/35258953 http://dx.doi.org/10.1021/acs.jcim.1c01074 |
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author | Ishida, Shoichi Terayama, Kei Kojima, Ryosuke Takasu, Kiyosei Okuno, Yasushi |
author_facet | Ishida, Shoichi Terayama, Kei Kojima, Ryosuke Takasu, Kiyosei Okuno, Yasushi |
author_sort | Ishida, Shoichi |
collection | PubMed |
description | [Image: see text] Computer-aided synthesis planning (CASP) aims to assist chemists in performing retrosynthetic analysis for which they utilize their experiments, intuition, and knowledge. Recent breakthroughs in machine learning (ML) techniques, including deep neural networks, have significantly improved data-driven synthetic route designs without human intervention. However, learning chemical knowledge by ML for practical synthesis planning has not yet been adequately achieved and remains a challenging problem. In this study, we developed a data-driven CASP application integrated with various portions of retrosynthesis knowledge called “ReTReK” that introduces the knowledge as adjustable parameters into the evaluation of promising search directions. The experimental results showed that ReTReK successfully searched synthetic routes based on the specified retrosynthesis knowledge, indicating that the synthetic routes searched with the knowledge were preferred to those without the knowledge. The concept of integrating retrosynthesis knowledge as adjustable parameters into a data-driven CASP application is expected to enhance the performance of both existing data-driven CASP applications and those under development. |
format | Online Article Text |
id | pubmed-8965881 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-89658812022-03-30 AI-Driven Synthetic Route Design Incorporated with Retrosynthesis Knowledge Ishida, Shoichi Terayama, Kei Kojima, Ryosuke Takasu, Kiyosei Okuno, Yasushi J Chem Inf Model [Image: see text] Computer-aided synthesis planning (CASP) aims to assist chemists in performing retrosynthetic analysis for which they utilize their experiments, intuition, and knowledge. Recent breakthroughs in machine learning (ML) techniques, including deep neural networks, have significantly improved data-driven synthetic route designs without human intervention. However, learning chemical knowledge by ML for practical synthesis planning has not yet been adequately achieved and remains a challenging problem. In this study, we developed a data-driven CASP application integrated with various portions of retrosynthesis knowledge called “ReTReK” that introduces the knowledge as adjustable parameters into the evaluation of promising search directions. The experimental results showed that ReTReK successfully searched synthetic routes based on the specified retrosynthesis knowledge, indicating that the synthetic routes searched with the knowledge were preferred to those without the knowledge. The concept of integrating retrosynthesis knowledge as adjustable parameters into a data-driven CASP application is expected to enhance the performance of both existing data-driven CASP applications and those under development. American Chemical Society 2022-03-08 2022-03-28 /pmc/articles/PMC8965881/ /pubmed/35258953 http://dx.doi.org/10.1021/acs.jcim.1c01074 Text en © 2022 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by-nc-nd/4.0/Permits non-commercial access and re-use, provided that author attribution and integrity are maintained; but does not permit creation of adaptations or other derivative works (https://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Ishida, Shoichi Terayama, Kei Kojima, Ryosuke Takasu, Kiyosei Okuno, Yasushi AI-Driven Synthetic Route Design Incorporated with Retrosynthesis Knowledge |
title | AI-Driven Synthetic Route Design Incorporated with
Retrosynthesis Knowledge |
title_full | AI-Driven Synthetic Route Design Incorporated with
Retrosynthesis Knowledge |
title_fullStr | AI-Driven Synthetic Route Design Incorporated with
Retrosynthesis Knowledge |
title_full_unstemmed | AI-Driven Synthetic Route Design Incorporated with
Retrosynthesis Knowledge |
title_short | AI-Driven Synthetic Route Design Incorporated with
Retrosynthesis Knowledge |
title_sort | ai-driven synthetic route design incorporated with
retrosynthesis knowledge |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8965881/ https://www.ncbi.nlm.nih.gov/pubmed/35258953 http://dx.doi.org/10.1021/acs.jcim.1c01074 |
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