Cargando…

Landscape of KRAS(G12C), Associated Genomic Alterations, and Interrelation With Immuno-Oncology Biomarkers in KRAS-Mutated Cancers

Promising single-agent activity from sotorasib and adagrasib in KRAS(G12C)-mutant tumors has provided clinical evidence of effective KRAS signaling inhibition. However, comprehensive analysis of KRAS-variant prevalence, genomic alterations, and the relationship between KRAS and immuno-oncology bioma...

Descripción completa

Detalles Bibliográficos
Autores principales: Salem, Mohamed E., El-Refai, Sherif M., Sha, Wei, Puccini, Alberto, Grothey, Axel, George, Thomas J., Hwang, Jimmy J., O'Neil, Bert, Barrett, Alexander S., Kadakia, Kunal C., Musselwhite, Laura W., Raghavan, Derek, Van Cutsem, Eric, Tabernero, Josep, Tie, Jeanne
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Wolters Kluwer Health 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8966967/
https://www.ncbi.nlm.nih.gov/pubmed/35319967
http://dx.doi.org/10.1200/PO.21.00245
_version_ 1784678737607917568
author Salem, Mohamed E.
El-Refai, Sherif M.
Sha, Wei
Puccini, Alberto
Grothey, Axel
George, Thomas J.
Hwang, Jimmy J.
O'Neil, Bert
Barrett, Alexander S.
Kadakia, Kunal C.
Musselwhite, Laura W.
Raghavan, Derek
Van Cutsem, Eric
Tabernero, Josep
Tie, Jeanne
author_facet Salem, Mohamed E.
El-Refai, Sherif M.
Sha, Wei
Puccini, Alberto
Grothey, Axel
George, Thomas J.
Hwang, Jimmy J.
O'Neil, Bert
Barrett, Alexander S.
Kadakia, Kunal C.
Musselwhite, Laura W.
Raghavan, Derek
Van Cutsem, Eric
Tabernero, Josep
Tie, Jeanne
author_sort Salem, Mohamed E.
collection PubMed
description Promising single-agent activity from sotorasib and adagrasib in KRAS(G12C)-mutant tumors has provided clinical evidence of effective KRAS signaling inhibition. However, comprehensive analysis of KRAS-variant prevalence, genomic alterations, and the relationship between KRAS and immuno-oncology biomarkers is lacking. MATERIALS AND METHODS: Retrospective analysis of deidentified records from 79,004 patients with various cancers who underwent next-generation sequencing was performed. Fisher's exact test evaluated the association between cancer subtypes and KRAS variants. Logistic regression assessed KRAS(G12C) comutations with other oncogenes and the association between KRAS variants and immuno-oncology biomarkers. RESULTS: Of the 79,004 samples assessed, 13,758 (17.4%) harbored KRAS mutations, with 1,632 (11.9%) harboring KRAS(G12C) and 12,126 (88.1%) harboring other KRAS variants (KRAS(non-G12C)). Compared with KRAS(non-G12C) across all tumor subtypes, KRAS(G12C) was more prevalent in females (56% v 51%, false discovery rate-adjusted P value [FDR-P] = .0006), current or prior smokers (85% v 56%, FDR-P < .0001), and patients age > 60 years (73% v 63%, FDR-P ≤ .0001). The most frequent KRAS variants across all subtypes were G12D (29.5%), G12V (23.0%), G12C (11.9%), G13D (6.5%), and G12R (6.2%). KRAS(G12C) was most prevalent in patients with non–small-cell lung cancer (9%), appendiceal (3.9%), colorectal (3.2%), tumor of unknown origin (1.6%), small bowel (1.43%), and pancreatic (1.3%) cancers. Compared with KRAS(non-G12C)-mutated, KRAS(G12C)-mutated tumors were significantly associated with tumor mutational burden-high status (17.9% v 8.4%, odds ratio [OR] = 2.38; FDR-P < .0001). KRAS(G12C)-mutated tumors exhibited a distinct comutation profile from KRAS(non-G12C)-mutated tumors, including higher comutations of STK11 (20.59% v 5.95%, OR = 4.10; FDR-P < .01) and KEAP1 (15.38% v 4.61%, OR = 3.76; FDR-P < .01). CONCLUSION: This study presents the first large-scale, pan-cancer genomic characterization of KRAS(G12C). The KRAS(G12C) mutation was more prevalent in females and older patients and appeared to be associated with smoking status. KRAS(G12C) tumors exhibited a distinct comutation profile and were associated with tumor mutational burden-high status.
format Online
Article
Text
id pubmed-8966967
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Wolters Kluwer Health
record_format MEDLINE/PubMed
spelling pubmed-89669672022-03-31 Landscape of KRAS(G12C), Associated Genomic Alterations, and Interrelation With Immuno-Oncology Biomarkers in KRAS-Mutated Cancers Salem, Mohamed E. El-Refai, Sherif M. Sha, Wei Puccini, Alberto Grothey, Axel George, Thomas J. Hwang, Jimmy J. O'Neil, Bert Barrett, Alexander S. Kadakia, Kunal C. Musselwhite, Laura W. Raghavan, Derek Van Cutsem, Eric Tabernero, Josep Tie, Jeanne JCO Precis Oncol ORIGINAL REPORTS Promising single-agent activity from sotorasib and adagrasib in KRAS(G12C)-mutant tumors has provided clinical evidence of effective KRAS signaling inhibition. However, comprehensive analysis of KRAS-variant prevalence, genomic alterations, and the relationship between KRAS and immuno-oncology biomarkers is lacking. MATERIALS AND METHODS: Retrospective analysis of deidentified records from 79,004 patients with various cancers who underwent next-generation sequencing was performed. Fisher's exact test evaluated the association between cancer subtypes and KRAS variants. Logistic regression assessed KRAS(G12C) comutations with other oncogenes and the association between KRAS variants and immuno-oncology biomarkers. RESULTS: Of the 79,004 samples assessed, 13,758 (17.4%) harbored KRAS mutations, with 1,632 (11.9%) harboring KRAS(G12C) and 12,126 (88.1%) harboring other KRAS variants (KRAS(non-G12C)). Compared with KRAS(non-G12C) across all tumor subtypes, KRAS(G12C) was more prevalent in females (56% v 51%, false discovery rate-adjusted P value [FDR-P] = .0006), current or prior smokers (85% v 56%, FDR-P < .0001), and patients age > 60 years (73% v 63%, FDR-P ≤ .0001). The most frequent KRAS variants across all subtypes were G12D (29.5%), G12V (23.0%), G12C (11.9%), G13D (6.5%), and G12R (6.2%). KRAS(G12C) was most prevalent in patients with non–small-cell lung cancer (9%), appendiceal (3.9%), colorectal (3.2%), tumor of unknown origin (1.6%), small bowel (1.43%), and pancreatic (1.3%) cancers. Compared with KRAS(non-G12C)-mutated, KRAS(G12C)-mutated tumors were significantly associated with tumor mutational burden-high status (17.9% v 8.4%, odds ratio [OR] = 2.38; FDR-P < .0001). KRAS(G12C)-mutated tumors exhibited a distinct comutation profile from KRAS(non-G12C)-mutated tumors, including higher comutations of STK11 (20.59% v 5.95%, OR = 4.10; FDR-P < .01) and KEAP1 (15.38% v 4.61%, OR = 3.76; FDR-P < .01). CONCLUSION: This study presents the first large-scale, pan-cancer genomic characterization of KRAS(G12C). The KRAS(G12C) mutation was more prevalent in females and older patients and appeared to be associated with smoking status. KRAS(G12C) tumors exhibited a distinct comutation profile and were associated with tumor mutational burden-high status. Wolters Kluwer Health 2022-03-23 /pmc/articles/PMC8966967/ /pubmed/35319967 http://dx.doi.org/10.1200/PO.21.00245 Text en © 2022 by American Society of Clinical Oncology https://creativecommons.org/licenses/by/4.0/Licensed under the Creative Commons Attribution 4.0 License: http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/)
spellingShingle ORIGINAL REPORTS
Salem, Mohamed E.
El-Refai, Sherif M.
Sha, Wei
Puccini, Alberto
Grothey, Axel
George, Thomas J.
Hwang, Jimmy J.
O'Neil, Bert
Barrett, Alexander S.
Kadakia, Kunal C.
Musselwhite, Laura W.
Raghavan, Derek
Van Cutsem, Eric
Tabernero, Josep
Tie, Jeanne
Landscape of KRAS(G12C), Associated Genomic Alterations, and Interrelation With Immuno-Oncology Biomarkers in KRAS-Mutated Cancers
title Landscape of KRAS(G12C), Associated Genomic Alterations, and Interrelation With Immuno-Oncology Biomarkers in KRAS-Mutated Cancers
title_full Landscape of KRAS(G12C), Associated Genomic Alterations, and Interrelation With Immuno-Oncology Biomarkers in KRAS-Mutated Cancers
title_fullStr Landscape of KRAS(G12C), Associated Genomic Alterations, and Interrelation With Immuno-Oncology Biomarkers in KRAS-Mutated Cancers
title_full_unstemmed Landscape of KRAS(G12C), Associated Genomic Alterations, and Interrelation With Immuno-Oncology Biomarkers in KRAS-Mutated Cancers
title_short Landscape of KRAS(G12C), Associated Genomic Alterations, and Interrelation With Immuno-Oncology Biomarkers in KRAS-Mutated Cancers
title_sort landscape of kras(g12c), associated genomic alterations, and interrelation with immuno-oncology biomarkers in kras-mutated cancers
topic ORIGINAL REPORTS
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8966967/
https://www.ncbi.nlm.nih.gov/pubmed/35319967
http://dx.doi.org/10.1200/PO.21.00245
work_keys_str_mv AT salemmohamede landscapeofkrasg12cassociatedgenomicalterationsandinterrelationwithimmunooncologybiomarkersinkrasmutatedcancers
AT elrefaisherifm landscapeofkrasg12cassociatedgenomicalterationsandinterrelationwithimmunooncologybiomarkersinkrasmutatedcancers
AT shawei landscapeofkrasg12cassociatedgenomicalterationsandinterrelationwithimmunooncologybiomarkersinkrasmutatedcancers
AT puccinialberto landscapeofkrasg12cassociatedgenomicalterationsandinterrelationwithimmunooncologybiomarkersinkrasmutatedcancers
AT grotheyaxel landscapeofkrasg12cassociatedgenomicalterationsandinterrelationwithimmunooncologybiomarkersinkrasmutatedcancers
AT georgethomasj landscapeofkrasg12cassociatedgenomicalterationsandinterrelationwithimmunooncologybiomarkersinkrasmutatedcancers
AT hwangjimmyj landscapeofkrasg12cassociatedgenomicalterationsandinterrelationwithimmunooncologybiomarkersinkrasmutatedcancers
AT oneilbert landscapeofkrasg12cassociatedgenomicalterationsandinterrelationwithimmunooncologybiomarkersinkrasmutatedcancers
AT barrettalexanders landscapeofkrasg12cassociatedgenomicalterationsandinterrelationwithimmunooncologybiomarkersinkrasmutatedcancers
AT kadakiakunalc landscapeofkrasg12cassociatedgenomicalterationsandinterrelationwithimmunooncologybiomarkersinkrasmutatedcancers
AT musselwhitelauraw landscapeofkrasg12cassociatedgenomicalterationsandinterrelationwithimmunooncologybiomarkersinkrasmutatedcancers
AT raghavanderek landscapeofkrasg12cassociatedgenomicalterationsandinterrelationwithimmunooncologybiomarkersinkrasmutatedcancers
AT vancutsemeric landscapeofkrasg12cassociatedgenomicalterationsandinterrelationwithimmunooncologybiomarkersinkrasmutatedcancers
AT tabernerojosep landscapeofkrasg12cassociatedgenomicalterationsandinterrelationwithimmunooncologybiomarkersinkrasmutatedcancers
AT tiejeanne landscapeofkrasg12cassociatedgenomicalterationsandinterrelationwithimmunooncologybiomarkersinkrasmutatedcancers