Cargando…
Complete chloroplast genome sequence and annotation of Actinodaphne lecomtei C.K.Allen, 1938 (Lauraceae)
Actinodaphne lecomtei C.K.Allen, 1938 is an evergreen tree of the Lauraceae family and grows at the mountainous areas of southwestern China. In this study, we presented the first complete chloroplast genome sequence of A. lecomtei. We analyzed the chloroplast genome structure of A. lecomtei and perf...
Autores principales: | , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8967194/ https://www.ncbi.nlm.nih.gov/pubmed/35372691 http://dx.doi.org/10.1080/23802359.2022.2054382 |
_version_ | 1784678789191565312 |
---|---|
author | Chen, Zimeng He, Li Weicai, Song Shi, Wenbo Gong, Qin Shi, Chao |
author_facet | Chen, Zimeng He, Li Weicai, Song Shi, Wenbo Gong, Qin Shi, Chao |
author_sort | Chen, Zimeng |
collection | PubMed |
description | Actinodaphne lecomtei C.K.Allen, 1938 is an evergreen tree of the Lauraceae family and grows at the mountainous areas of southwestern China. In this study, we presented the first complete chloroplast genome sequence of A. lecomtei. We analyzed the chloroplast genome structure of A. lecomtei and performed a phylogenetic analysis. The complete chloroplast genome of A. lecomtei was 152,863 bp in length which contains a large single-copy (LSC) region of 93,763 bp, a small single-copy (SSC) region of 18,814 bp, and two inverted repeat (IR) regions of 20,143 bp. The analysis identified 128 genes, comprised of 84 protein-coding genes, 36 tRNAs, and eight rRNAs. The GC content of A. lecomtei complete chloroplast genome was 39.1%. The phylogenetic analysis result demonstrated that A. lecomtei was closely related to A. obovate. |
format | Online Article Text |
id | pubmed-8967194 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-89671942022-03-31 Complete chloroplast genome sequence and annotation of Actinodaphne lecomtei C.K.Allen, 1938 (Lauraceae) Chen, Zimeng He, Li Weicai, Song Shi, Wenbo Gong, Qin Shi, Chao Mitochondrial DNA B Resour Mitogenome Announcement Actinodaphne lecomtei C.K.Allen, 1938 is an evergreen tree of the Lauraceae family and grows at the mountainous areas of southwestern China. In this study, we presented the first complete chloroplast genome sequence of A. lecomtei. We analyzed the chloroplast genome structure of A. lecomtei and performed a phylogenetic analysis. The complete chloroplast genome of A. lecomtei was 152,863 bp in length which contains a large single-copy (LSC) region of 93,763 bp, a small single-copy (SSC) region of 18,814 bp, and two inverted repeat (IR) regions of 20,143 bp. The analysis identified 128 genes, comprised of 84 protein-coding genes, 36 tRNAs, and eight rRNAs. The GC content of A. lecomtei complete chloroplast genome was 39.1%. The phylogenetic analysis result demonstrated that A. lecomtei was closely related to A. obovate. Taylor & Francis 2022-03-28 /pmc/articles/PMC8967194/ /pubmed/35372691 http://dx.doi.org/10.1080/23802359.2022.2054382 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Chen, Zimeng He, Li Weicai, Song Shi, Wenbo Gong, Qin Shi, Chao Complete chloroplast genome sequence and annotation of Actinodaphne lecomtei C.K.Allen, 1938 (Lauraceae) |
title | Complete chloroplast genome sequence and annotation of Actinodaphne lecomtei C.K.Allen, 1938 (Lauraceae) |
title_full | Complete chloroplast genome sequence and annotation of Actinodaphne lecomtei C.K.Allen, 1938 (Lauraceae) |
title_fullStr | Complete chloroplast genome sequence and annotation of Actinodaphne lecomtei C.K.Allen, 1938 (Lauraceae) |
title_full_unstemmed | Complete chloroplast genome sequence and annotation of Actinodaphne lecomtei C.K.Allen, 1938 (Lauraceae) |
title_short | Complete chloroplast genome sequence and annotation of Actinodaphne lecomtei C.K.Allen, 1938 (Lauraceae) |
title_sort | complete chloroplast genome sequence and annotation of actinodaphne lecomtei c.k.allen, 1938 (lauraceae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8967194/ https://www.ncbi.nlm.nih.gov/pubmed/35372691 http://dx.doi.org/10.1080/23802359.2022.2054382 |
work_keys_str_mv | AT chenzimeng completechloroplastgenomesequenceandannotationofactinodaphnelecomteickallen1938lauraceae AT heli completechloroplastgenomesequenceandannotationofactinodaphnelecomteickallen1938lauraceae AT weicaisong completechloroplastgenomesequenceandannotationofactinodaphnelecomteickallen1938lauraceae AT shiwenbo completechloroplastgenomesequenceandannotationofactinodaphnelecomteickallen1938lauraceae AT gongqin completechloroplastgenomesequenceandannotationofactinodaphnelecomteickallen1938lauraceae AT shichao completechloroplastgenomesequenceandannotationofactinodaphnelecomteickallen1938lauraceae |