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Comparative microelectrode array data of the functional development of hPSC-derived and rat neuronal networks

We present a dataset of microelectrode array (MEA) recordings from human pluripotent stem cell (hPSC)-derived and rat embryonic cortical neurons during their in vitro maturation. The data were prepared to assess extracellularly recorded spontaneous activity and to compare the functional development...

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Autores principales: Kapucu, Fikret Emre, Vinogradov, Andrey, Hyvärinen, Tanja, Ylä-Outinen, Laura, Narkilahti, Susanna
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8969177/
https://www.ncbi.nlm.nih.gov/pubmed/35354837
http://dx.doi.org/10.1038/s41597-022-01242-4
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author Kapucu, Fikret Emre
Vinogradov, Andrey
Hyvärinen, Tanja
Ylä-Outinen, Laura
Narkilahti, Susanna
author_facet Kapucu, Fikret Emre
Vinogradov, Andrey
Hyvärinen, Tanja
Ylä-Outinen, Laura
Narkilahti, Susanna
author_sort Kapucu, Fikret Emre
collection PubMed
description We present a dataset of microelectrode array (MEA) recordings from human pluripotent stem cell (hPSC)-derived and rat embryonic cortical neurons during their in vitro maturation. The data were prepared to assess extracellularly recorded spontaneous activity and to compare the functional development of these neuronal networks. In addition to recordings of spontaneous activity, we provide pharmacological responses of hPSC-derived and rat cortical cultures at their mature stage. Together with the recorded electrode raw data, we share the analysis code to form a comprehensive dataset including spike times, spike waveforms, burst activity and network synchronization metrics calculated with two different connectivity estimators. Moreover, we provide the analysis code that produced the key scientific findings published previously with this dataset. This large dataset enables investigation of the functional aspects of maturing cortical neuronal networks and provides substantial parameters to assess the differences and similarities between hPSC-derived and rat cortical networks in vitro. This publicly available dataset will be beneficial, especially for experimental and computational neuroscientists.
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spelling pubmed-89691772022-04-20 Comparative microelectrode array data of the functional development of hPSC-derived and rat neuronal networks Kapucu, Fikret Emre Vinogradov, Andrey Hyvärinen, Tanja Ylä-Outinen, Laura Narkilahti, Susanna Sci Data Data Descriptor We present a dataset of microelectrode array (MEA) recordings from human pluripotent stem cell (hPSC)-derived and rat embryonic cortical neurons during their in vitro maturation. The data were prepared to assess extracellularly recorded spontaneous activity and to compare the functional development of these neuronal networks. In addition to recordings of spontaneous activity, we provide pharmacological responses of hPSC-derived and rat cortical cultures at their mature stage. Together with the recorded electrode raw data, we share the analysis code to form a comprehensive dataset including spike times, spike waveforms, burst activity and network synchronization metrics calculated with two different connectivity estimators. Moreover, we provide the analysis code that produced the key scientific findings published previously with this dataset. This large dataset enables investigation of the functional aspects of maturing cortical neuronal networks and provides substantial parameters to assess the differences and similarities between hPSC-derived and rat cortical networks in vitro. This publicly available dataset will be beneficial, especially for experimental and computational neuroscientists. Nature Publishing Group UK 2022-03-30 /pmc/articles/PMC8969177/ /pubmed/35354837 http://dx.doi.org/10.1038/s41597-022-01242-4 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Data Descriptor
Kapucu, Fikret Emre
Vinogradov, Andrey
Hyvärinen, Tanja
Ylä-Outinen, Laura
Narkilahti, Susanna
Comparative microelectrode array data of the functional development of hPSC-derived and rat neuronal networks
title Comparative microelectrode array data of the functional development of hPSC-derived and rat neuronal networks
title_full Comparative microelectrode array data of the functional development of hPSC-derived and rat neuronal networks
title_fullStr Comparative microelectrode array data of the functional development of hPSC-derived and rat neuronal networks
title_full_unstemmed Comparative microelectrode array data of the functional development of hPSC-derived and rat neuronal networks
title_short Comparative microelectrode array data of the functional development of hPSC-derived and rat neuronal networks
title_sort comparative microelectrode array data of the functional development of hpsc-derived and rat neuronal networks
topic Data Descriptor
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8969177/
https://www.ncbi.nlm.nih.gov/pubmed/35354837
http://dx.doi.org/10.1038/s41597-022-01242-4
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