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Comparative microelectrode array data of the functional development of hPSC-derived and rat neuronal networks
We present a dataset of microelectrode array (MEA) recordings from human pluripotent stem cell (hPSC)-derived and rat embryonic cortical neurons during their in vitro maturation. The data were prepared to assess extracellularly recorded spontaneous activity and to compare the functional development...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8969177/ https://www.ncbi.nlm.nih.gov/pubmed/35354837 http://dx.doi.org/10.1038/s41597-022-01242-4 |
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author | Kapucu, Fikret Emre Vinogradov, Andrey Hyvärinen, Tanja Ylä-Outinen, Laura Narkilahti, Susanna |
author_facet | Kapucu, Fikret Emre Vinogradov, Andrey Hyvärinen, Tanja Ylä-Outinen, Laura Narkilahti, Susanna |
author_sort | Kapucu, Fikret Emre |
collection | PubMed |
description | We present a dataset of microelectrode array (MEA) recordings from human pluripotent stem cell (hPSC)-derived and rat embryonic cortical neurons during their in vitro maturation. The data were prepared to assess extracellularly recorded spontaneous activity and to compare the functional development of these neuronal networks. In addition to recordings of spontaneous activity, we provide pharmacological responses of hPSC-derived and rat cortical cultures at their mature stage. Together with the recorded electrode raw data, we share the analysis code to form a comprehensive dataset including spike times, spike waveforms, burst activity and network synchronization metrics calculated with two different connectivity estimators. Moreover, we provide the analysis code that produced the key scientific findings published previously with this dataset. This large dataset enables investigation of the functional aspects of maturing cortical neuronal networks and provides substantial parameters to assess the differences and similarities between hPSC-derived and rat cortical networks in vitro. This publicly available dataset will be beneficial, especially for experimental and computational neuroscientists. |
format | Online Article Text |
id | pubmed-8969177 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-89691772022-04-20 Comparative microelectrode array data of the functional development of hPSC-derived and rat neuronal networks Kapucu, Fikret Emre Vinogradov, Andrey Hyvärinen, Tanja Ylä-Outinen, Laura Narkilahti, Susanna Sci Data Data Descriptor We present a dataset of microelectrode array (MEA) recordings from human pluripotent stem cell (hPSC)-derived and rat embryonic cortical neurons during their in vitro maturation. The data were prepared to assess extracellularly recorded spontaneous activity and to compare the functional development of these neuronal networks. In addition to recordings of spontaneous activity, we provide pharmacological responses of hPSC-derived and rat cortical cultures at their mature stage. Together with the recorded electrode raw data, we share the analysis code to form a comprehensive dataset including spike times, spike waveforms, burst activity and network synchronization metrics calculated with two different connectivity estimators. Moreover, we provide the analysis code that produced the key scientific findings published previously with this dataset. This large dataset enables investigation of the functional aspects of maturing cortical neuronal networks and provides substantial parameters to assess the differences and similarities between hPSC-derived and rat cortical networks in vitro. This publicly available dataset will be beneficial, especially for experimental and computational neuroscientists. Nature Publishing Group UK 2022-03-30 /pmc/articles/PMC8969177/ /pubmed/35354837 http://dx.doi.org/10.1038/s41597-022-01242-4 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Data Descriptor Kapucu, Fikret Emre Vinogradov, Andrey Hyvärinen, Tanja Ylä-Outinen, Laura Narkilahti, Susanna Comparative microelectrode array data of the functional development of hPSC-derived and rat neuronal networks |
title | Comparative microelectrode array data of the functional development of hPSC-derived and rat neuronal networks |
title_full | Comparative microelectrode array data of the functional development of hPSC-derived and rat neuronal networks |
title_fullStr | Comparative microelectrode array data of the functional development of hPSC-derived and rat neuronal networks |
title_full_unstemmed | Comparative microelectrode array data of the functional development of hPSC-derived and rat neuronal networks |
title_short | Comparative microelectrode array data of the functional development of hPSC-derived and rat neuronal networks |
title_sort | comparative microelectrode array data of the functional development of hpsc-derived and rat neuronal networks |
topic | Data Descriptor |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8969177/ https://www.ncbi.nlm.nih.gov/pubmed/35354837 http://dx.doi.org/10.1038/s41597-022-01242-4 |
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