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RNA 5-Methylcytosine Regulators Contribute to Metabolism Heterogeneity and Predict Prognosis in Ovarian Cancer

5-Methylcytosine (m(5)C) is an abundant and highly conserved modification in RNAs. The dysregulation of RNA m(5)C methylation has been reported in cancers, but the regulatory network in ovarian cancer of RNA m(5)C methylation-related genes and its implication in metabolic regulation remain largely u...

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Autores principales: Xu, Jie, Liu, Xiaoyi, Chen, Yanjie, Wang, Yuya, Liu, Tao, Yi, Ping
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8971725/
https://www.ncbi.nlm.nih.gov/pubmed/35372362
http://dx.doi.org/10.3389/fcell.2022.807786
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author Xu, Jie
Liu, Xiaoyi
Chen, Yanjie
Wang, Yuya
Liu, Tao
Yi, Ping
author_facet Xu, Jie
Liu, Xiaoyi
Chen, Yanjie
Wang, Yuya
Liu, Tao
Yi, Ping
author_sort Xu, Jie
collection PubMed
description 5-Methylcytosine (m(5)C) is an abundant and highly conserved modification in RNAs. The dysregulation of RNA m(5)C methylation has been reported in cancers, but the regulatory network in ovarian cancer of RNA m(5)C methylation-related genes and its implication in metabolic regulation remain largely unexplored. In this study, RNA-sequencing data and clinical information of 374 ovarian cancer patients were downloaded from The Cancer Genome Atlas database, and a total of 14 RNA m(5)C regulators were included. Through unsupervised consensus clustering, two clusters with different m(5)C modification patterns were identified with distinct survivals. According to enrichment analyses, glycosaminoglycan and collagen metabolism–related pathways were specifically activated in cluster 1, whereas fatty acid metabolism–related pathways were enriched in cluster 2, which had better overall survival (OS). Besides the metabolism heterogeneity, the higher sensitivity to platinum and paclitaxel in cluster 2 can further explain the improved OS. Ultimately, a least absolute shrinkage and selection operator prediction model formed by ALYREF, NOP2, and TET2 toward OS was constructed. In conclusion, distinct m(5)C modification pattern exhibited metabolism heterogeneity, different chemotherapy sensitivity, and consequently survival difference, providing evidence for risk stratification.
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spelling pubmed-89717252022-04-02 RNA 5-Methylcytosine Regulators Contribute to Metabolism Heterogeneity and Predict Prognosis in Ovarian Cancer Xu, Jie Liu, Xiaoyi Chen, Yanjie Wang, Yuya Liu, Tao Yi, Ping Front Cell Dev Biol Cell and Developmental Biology 5-Methylcytosine (m(5)C) is an abundant and highly conserved modification in RNAs. The dysregulation of RNA m(5)C methylation has been reported in cancers, but the regulatory network in ovarian cancer of RNA m(5)C methylation-related genes and its implication in metabolic regulation remain largely unexplored. In this study, RNA-sequencing data and clinical information of 374 ovarian cancer patients were downloaded from The Cancer Genome Atlas database, and a total of 14 RNA m(5)C regulators were included. Through unsupervised consensus clustering, two clusters with different m(5)C modification patterns were identified with distinct survivals. According to enrichment analyses, glycosaminoglycan and collagen metabolism–related pathways were specifically activated in cluster 1, whereas fatty acid metabolism–related pathways were enriched in cluster 2, which had better overall survival (OS). Besides the metabolism heterogeneity, the higher sensitivity to platinum and paclitaxel in cluster 2 can further explain the improved OS. Ultimately, a least absolute shrinkage and selection operator prediction model formed by ALYREF, NOP2, and TET2 toward OS was constructed. In conclusion, distinct m(5)C modification pattern exhibited metabolism heterogeneity, different chemotherapy sensitivity, and consequently survival difference, providing evidence for risk stratification. Frontiers Media S.A. 2022-03-18 /pmc/articles/PMC8971725/ /pubmed/35372362 http://dx.doi.org/10.3389/fcell.2022.807786 Text en Copyright © 2022 Xu, Liu, Chen, Wang, Liu and Yi. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Cell and Developmental Biology
Xu, Jie
Liu, Xiaoyi
Chen, Yanjie
Wang, Yuya
Liu, Tao
Yi, Ping
RNA 5-Methylcytosine Regulators Contribute to Metabolism Heterogeneity and Predict Prognosis in Ovarian Cancer
title RNA 5-Methylcytosine Regulators Contribute to Metabolism Heterogeneity and Predict Prognosis in Ovarian Cancer
title_full RNA 5-Methylcytosine Regulators Contribute to Metabolism Heterogeneity and Predict Prognosis in Ovarian Cancer
title_fullStr RNA 5-Methylcytosine Regulators Contribute to Metabolism Heterogeneity and Predict Prognosis in Ovarian Cancer
title_full_unstemmed RNA 5-Methylcytosine Regulators Contribute to Metabolism Heterogeneity and Predict Prognosis in Ovarian Cancer
title_short RNA 5-Methylcytosine Regulators Contribute to Metabolism Heterogeneity and Predict Prognosis in Ovarian Cancer
title_sort rna 5-methylcytosine regulators contribute to metabolism heterogeneity and predict prognosis in ovarian cancer
topic Cell and Developmental Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8971725/
https://www.ncbi.nlm.nih.gov/pubmed/35372362
http://dx.doi.org/10.3389/fcell.2022.807786
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