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Development and Use of a Reproducible Framework for Spatiotemporal Climatic Risk Assessment and its Association with Decadal Trend of Dengue in India

INTRODUCTION: The study aimed to develop a reproducible, open-source, and scalable framework for extracting climate data from satellite imagery, understanding dengue's decadal trend in India, and estimating the relationship between dengue occurrence and climatic factors. MATERIALS AND METHODS:...

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Autores principales: Singh, Gurpreet, Mitra, Arun, Soman, Biju
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Wolters Kluwer - Medknow 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8971875/
https://www.ncbi.nlm.nih.gov/pubmed/35368491
http://dx.doi.org/10.4103/ijcm.ijcm_862_21
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author Singh, Gurpreet
Mitra, Arun
Soman, Biju
author_facet Singh, Gurpreet
Mitra, Arun
Soman, Biju
author_sort Singh, Gurpreet
collection PubMed
description INTRODUCTION: The study aimed to develop a reproducible, open-source, and scalable framework for extracting climate data from satellite imagery, understanding dengue's decadal trend in India, and estimating the relationship between dengue occurrence and climatic factors. MATERIALS AND METHODS: A framework was developed in the Open Source Software, and it was empirically tested using reported annual dengue occurrence data in India during 2010–2019. Census 2011 and population projections were used to calculate incidence rates. Zonal statistics were performed to extract climate parameters. Correlation coefficients were calculated to estimate the relationship of dengue with the annual average of daily mean and minimum temperature and rainy days. RESULTS: Total 818,973 dengue cases were reported from India, with median annual incidence of 6.57 per lakh population; it was high in 2019 and 2017 (11.80 and 11.55 per lakh) and the Southern region (8.18 per lakh). The highest median annual dengue incidence was observed in Punjab (24.49 per lakh). Daily climatic data were extracted from 1164 coordinate locations across the country for the decadal period (4,249,734 observations). The annual average of daily temperature and rainy days positively correlated with dengue in India (r = 0.31 and 0.06, at P < 0.01 and 0.30, respectively). CONCLUSION: The study provides a reproducible algorithm for bulk climatic data extraction from research-level satellite imagery. Infectious disease models can be used to understand disease epidemiology and strengthen disease surveillance in the country.
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spelling pubmed-89718752022-04-02 Development and Use of a Reproducible Framework for Spatiotemporal Climatic Risk Assessment and its Association with Decadal Trend of Dengue in India Singh, Gurpreet Mitra, Arun Soman, Biju Indian J Community Med Original Article INTRODUCTION: The study aimed to develop a reproducible, open-source, and scalable framework for extracting climate data from satellite imagery, understanding dengue's decadal trend in India, and estimating the relationship between dengue occurrence and climatic factors. MATERIALS AND METHODS: A framework was developed in the Open Source Software, and it was empirically tested using reported annual dengue occurrence data in India during 2010–2019. Census 2011 and population projections were used to calculate incidence rates. Zonal statistics were performed to extract climate parameters. Correlation coefficients were calculated to estimate the relationship of dengue with the annual average of daily mean and minimum temperature and rainy days. RESULTS: Total 818,973 dengue cases were reported from India, with median annual incidence of 6.57 per lakh population; it was high in 2019 and 2017 (11.80 and 11.55 per lakh) and the Southern region (8.18 per lakh). The highest median annual dengue incidence was observed in Punjab (24.49 per lakh). Daily climatic data were extracted from 1164 coordinate locations across the country for the decadal period (4,249,734 observations). The annual average of daily temperature and rainy days positively correlated with dengue in India (r = 0.31 and 0.06, at P < 0.01 and 0.30, respectively). CONCLUSION: The study provides a reproducible algorithm for bulk climatic data extraction from research-level satellite imagery. Infectious disease models can be used to understand disease epidemiology and strengthen disease surveillance in the country. Wolters Kluwer - Medknow 2022 2022-03-16 /pmc/articles/PMC8971875/ /pubmed/35368491 http://dx.doi.org/10.4103/ijcm.ijcm_862_21 Text en Copyright: © 2022 Indian Journal of Community Medicine https://creativecommons.org/licenses/by-nc-sa/4.0/This is an open access journal, and articles are distributed under the terms of the Creative Commons Attribution-NonCommercial-ShareAlike 4.0 License, which allows others to remix, tweak, and build upon the work non-commercially, as long as appropriate credit is given and the new creations are licensed under the identical terms.
spellingShingle Original Article
Singh, Gurpreet
Mitra, Arun
Soman, Biju
Development and Use of a Reproducible Framework for Spatiotemporal Climatic Risk Assessment and its Association with Decadal Trend of Dengue in India
title Development and Use of a Reproducible Framework for Spatiotemporal Climatic Risk Assessment and its Association with Decadal Trend of Dengue in India
title_full Development and Use of a Reproducible Framework for Spatiotemporal Climatic Risk Assessment and its Association with Decadal Trend of Dengue in India
title_fullStr Development and Use of a Reproducible Framework for Spatiotemporal Climatic Risk Assessment and its Association with Decadal Trend of Dengue in India
title_full_unstemmed Development and Use of a Reproducible Framework for Spatiotemporal Climatic Risk Assessment and its Association with Decadal Trend of Dengue in India
title_short Development and Use of a Reproducible Framework for Spatiotemporal Climatic Risk Assessment and its Association with Decadal Trend of Dengue in India
title_sort development and use of a reproducible framework for spatiotemporal climatic risk assessment and its association with decadal trend of dengue in india
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8971875/
https://www.ncbi.nlm.nih.gov/pubmed/35368491
http://dx.doi.org/10.4103/ijcm.ijcm_862_21
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