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Enhancing epidemiological surveillance of the emergence of the SARS-CoV-2 Omicron variant using spike gene target failure data, England, 15 November to 31 December 2021
When SARS-CoV-2 Omicron emerged in 2021, S gene target failure enabled differentiation between Omicron and the dominant Delta variant. In England, where S gene target surveillance (SGTS) was already established, this led to rapid identification (within ca 3 days of sample collection) of possible Omi...
| Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , |
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| Formato: | Online Artículo Texto |
| Lenguaje: | English |
| Publicado: |
European Centre for Disease Prevention and Control (ECDC)
2022
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| Materias: | |
| Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8971917/ https://www.ncbi.nlm.nih.gov/pubmed/35301981 http://dx.doi.org/10.2807/1560-7917.ES.2022.27.11.2200143 |
| _version_ | 1784679740097953792 |
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| author | Blomquist, Paula B Bridgen, Jessica Bray, Neil O’Connell, Anne Marie West, Daniel Groves, Natalie Gallagher, Eileen Utsi, Lara Jarvis, Christopher I Hardstaff, Jo L Byers, Chloe Metelmann, Soeren Simons, David Zaidi, Asad Twohig, Katherine A Savagar, Bethan Løchen, Alessandra Ryan, Cian Wrenn, Katie Saavedra-Campos, María Abedin, Zahidul Florence, Isaac Cleary, Paul Elson, Richard Vivancos, Roberto Lake, Iain R |
| author_facet | Blomquist, Paula B Bridgen, Jessica Bray, Neil O’Connell, Anne Marie West, Daniel Groves, Natalie Gallagher, Eileen Utsi, Lara Jarvis, Christopher I Hardstaff, Jo L Byers, Chloe Metelmann, Soeren Simons, David Zaidi, Asad Twohig, Katherine A Savagar, Bethan Løchen, Alessandra Ryan, Cian Wrenn, Katie Saavedra-Campos, María Abedin, Zahidul Florence, Isaac Cleary, Paul Elson, Richard Vivancos, Roberto Lake, Iain R |
| author_sort | Blomquist, Paula B |
| collection | PubMed |
| description | When SARS-CoV-2 Omicron emerged in 2021, S gene target failure enabled differentiation between Omicron and the dominant Delta variant. In England, where S gene target surveillance (SGTS) was already established, this led to rapid identification (within ca 3 days of sample collection) of possible Omicron cases, alongside real-time surveillance and modelling of Omicron growth. SGTS was key to public health action (including case identification and incident management), and we share applied insights on how and when to use SGTS. |
| format | Online Article Text |
| id | pubmed-8971917 |
| institution | National Center for Biotechnology Information |
| language | English |
| publishDate | 2022 |
| publisher | European Centre for Disease Prevention and Control (ECDC) |
| record_format | MEDLINE/PubMed |
| spelling | pubmed-89719172022-04-13 Enhancing epidemiological surveillance of the emergence of the SARS-CoV-2 Omicron variant using spike gene target failure data, England, 15 November to 31 December 2021 Blomquist, Paula B Bridgen, Jessica Bray, Neil O’Connell, Anne Marie West, Daniel Groves, Natalie Gallagher, Eileen Utsi, Lara Jarvis, Christopher I Hardstaff, Jo L Byers, Chloe Metelmann, Soeren Simons, David Zaidi, Asad Twohig, Katherine A Savagar, Bethan Løchen, Alessandra Ryan, Cian Wrenn, Katie Saavedra-Campos, María Abedin, Zahidul Florence, Isaac Cleary, Paul Elson, Richard Vivancos, Roberto Lake, Iain R Euro Surveill Rapid Communication When SARS-CoV-2 Omicron emerged in 2021, S gene target failure enabled differentiation between Omicron and the dominant Delta variant. In England, where S gene target surveillance (SGTS) was already established, this led to rapid identification (within ca 3 days of sample collection) of possible Omicron cases, alongside real-time surveillance and modelling of Omicron growth. SGTS was key to public health action (including case identification and incident management), and we share applied insights on how and when to use SGTS. European Centre for Disease Prevention and Control (ECDC) 2022-03-17 /pmc/articles/PMC8971917/ /pubmed/35301981 http://dx.doi.org/10.2807/1560-7917.ES.2022.27.11.2200143 Text en This article is copyright of the authors or their affiliated institutions, 2022. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution (CC BY 4.0) Licence. You may share and adapt the material, but must give appropriate credit to the source, provide a link to the licence, and indicate if changes were made. |
| spellingShingle | Rapid Communication Blomquist, Paula B Bridgen, Jessica Bray, Neil O’Connell, Anne Marie West, Daniel Groves, Natalie Gallagher, Eileen Utsi, Lara Jarvis, Christopher I Hardstaff, Jo L Byers, Chloe Metelmann, Soeren Simons, David Zaidi, Asad Twohig, Katherine A Savagar, Bethan Løchen, Alessandra Ryan, Cian Wrenn, Katie Saavedra-Campos, María Abedin, Zahidul Florence, Isaac Cleary, Paul Elson, Richard Vivancos, Roberto Lake, Iain R Enhancing epidemiological surveillance of the emergence of the SARS-CoV-2 Omicron variant using spike gene target failure data, England, 15 November to 31 December 2021 |
| title | Enhancing epidemiological surveillance of the emergence of the SARS-CoV-2 Omicron variant using spike gene target failure data, England, 15 November to 31 December 2021 |
| title_full | Enhancing epidemiological surveillance of the emergence of the SARS-CoV-2 Omicron variant using spike gene target failure data, England, 15 November to 31 December 2021 |
| title_fullStr | Enhancing epidemiological surveillance of the emergence of the SARS-CoV-2 Omicron variant using spike gene target failure data, England, 15 November to 31 December 2021 |
| title_full_unstemmed | Enhancing epidemiological surveillance of the emergence of the SARS-CoV-2 Omicron variant using spike gene target failure data, England, 15 November to 31 December 2021 |
| title_short | Enhancing epidemiological surveillance of the emergence of the SARS-CoV-2 Omicron variant using spike gene target failure data, England, 15 November to 31 December 2021 |
| title_sort | enhancing epidemiological surveillance of the emergence of the sars-cov-2 omicron variant using spike gene target failure data, england, 15 november to 31 december 2021 |
| topic | Rapid Communication |
| url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8971917/ https://www.ncbi.nlm.nih.gov/pubmed/35301981 http://dx.doi.org/10.2807/1560-7917.ES.2022.27.11.2200143 |
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