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Classification of pleural effusions using deep learning visual models: contrastive-loss
Blood and fluid analysis is extensively used for classifying the etiology of pleural effusion. However, most studies focused on determining the presence of a disease. This study classified pleural effusion etiology employing deep learning models by applying contrastive-loss. Patients with pleural ef...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8975824/ https://www.ncbi.nlm.nih.gov/pubmed/35365722 http://dx.doi.org/10.1038/s41598-022-09550-w |
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author | Lee, Jang Ho Choi, Chang-Min Park, Namu Park, Hyung Jun |
author_facet | Lee, Jang Ho Choi, Chang-Min Park, Namu Park, Hyung Jun |
author_sort | Lee, Jang Ho |
collection | PubMed |
description | Blood and fluid analysis is extensively used for classifying the etiology of pleural effusion. However, most studies focused on determining the presence of a disease. This study classified pleural effusion etiology employing deep learning models by applying contrastive-loss. Patients with pleural effusion who underwent thoracentesis between 2009 and 2019 at the Asan Medical Center were analyzed. Five different models for categorizing the etiology of pleural effusion were compared. The performance metrics were top-1 accuracy, top-2 accuracy, and micro-and weighted-AUROC. UMAP and t-SNE were used to visualize the contrastive-loss model’s embedding space. Although the 5 models displayed similar performance in the validation set, the contrastive-loss model showed the highest accuracy in the extra-validation set. Additionally, the accuracy and micro-AUROC of the contrastive-loss model were 81.7% and 0.942 in the validation set, and 66.2% and 0.867 in the extra-validation set. Furthermore, the embedding space visualization in the contrastive-loss model exhibited typical and atypical effusion results by comparing the true and false positives of the rule-based criteria. Therefore, classifying the etiology of pleural effusion was achievable using the contrastive-loss model. Conclusively, visualization of the contrastive-loss model will provide clinicians with valuable insights for etiology diagnosis by differentiating between typical and atypical disease types. |
format | Online Article Text |
id | pubmed-8975824 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-89758242022-04-05 Classification of pleural effusions using deep learning visual models: contrastive-loss Lee, Jang Ho Choi, Chang-Min Park, Namu Park, Hyung Jun Sci Rep Article Blood and fluid analysis is extensively used for classifying the etiology of pleural effusion. However, most studies focused on determining the presence of a disease. This study classified pleural effusion etiology employing deep learning models by applying contrastive-loss. Patients with pleural effusion who underwent thoracentesis between 2009 and 2019 at the Asan Medical Center were analyzed. Five different models for categorizing the etiology of pleural effusion were compared. The performance metrics were top-1 accuracy, top-2 accuracy, and micro-and weighted-AUROC. UMAP and t-SNE were used to visualize the contrastive-loss model’s embedding space. Although the 5 models displayed similar performance in the validation set, the contrastive-loss model showed the highest accuracy in the extra-validation set. Additionally, the accuracy and micro-AUROC of the contrastive-loss model were 81.7% and 0.942 in the validation set, and 66.2% and 0.867 in the extra-validation set. Furthermore, the embedding space visualization in the contrastive-loss model exhibited typical and atypical effusion results by comparing the true and false positives of the rule-based criteria. Therefore, classifying the etiology of pleural effusion was achievable using the contrastive-loss model. Conclusively, visualization of the contrastive-loss model will provide clinicians with valuable insights for etiology diagnosis by differentiating between typical and atypical disease types. Nature Publishing Group UK 2022-04-01 /pmc/articles/PMC8975824/ /pubmed/35365722 http://dx.doi.org/10.1038/s41598-022-09550-w Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Lee, Jang Ho Choi, Chang-Min Park, Namu Park, Hyung Jun Classification of pleural effusions using deep learning visual models: contrastive-loss |
title | Classification of pleural effusions using deep learning visual models: contrastive-loss |
title_full | Classification of pleural effusions using deep learning visual models: contrastive-loss |
title_fullStr | Classification of pleural effusions using deep learning visual models: contrastive-loss |
title_full_unstemmed | Classification of pleural effusions using deep learning visual models: contrastive-loss |
title_short | Classification of pleural effusions using deep learning visual models: contrastive-loss |
title_sort | classification of pleural effusions using deep learning visual models: contrastive-loss |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8975824/ https://www.ncbi.nlm.nih.gov/pubmed/35365722 http://dx.doi.org/10.1038/s41598-022-09550-w |
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