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Closed-form expressions and nonparametric estimation of COVID-19 infection rate()

Quantitative assessment of the infection rate of a virus is key to monitor the evolution of an epidemic. However, such variable is not accessible to direct measurement and its estimation requires the solution of a difficult inverse problem. In particular, being the result not only of biological but...

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Autores principales: Bisiacco, Mauro, Pillonetto, Gianluigi, Cobelli, Claudio
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier Ltd. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8976198/
https://www.ncbi.nlm.nih.gov/pubmed/35400084
http://dx.doi.org/10.1016/j.automatica.2022.110265
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author Bisiacco, Mauro
Pillonetto, Gianluigi
Cobelli, Claudio
author_facet Bisiacco, Mauro
Pillonetto, Gianluigi
Cobelli, Claudio
author_sort Bisiacco, Mauro
collection PubMed
description Quantitative assessment of the infection rate of a virus is key to monitor the evolution of an epidemic. However, such variable is not accessible to direct measurement and its estimation requires the solution of a difficult inverse problem. In particular, being the result not only of biological but also of social factors, the transmission dynamics can vary significantly in time. This makes questionable the use of parametric models which could be unable to capture their full complexity. In this paper we exploit compartmental models which include important COVID-19 peculiarities (like the presence of asymptomatic individuals) and allow the infection rate to assume any continuous-time profile. We show that these models are universal, i.e. capable to reproduce exactly any epidemic evolution, and extract from them closed-form expressions of the infection rate time-course. Building upon such expressions, we then design a regularized estimator able to reconstruct COVID-19 transmission dynamics in continuous-time. Using real data collected in Italy, our technique proves to be an useful tool to monitor COVID-19 transmission dynamics and to predict and assess the effect of lockdown restrictions.
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spelling pubmed-89761982022-04-04 Closed-form expressions and nonparametric estimation of COVID-19 infection rate() Bisiacco, Mauro Pillonetto, Gianluigi Cobelli, Claudio Automatica (Oxf) Brief Paper Quantitative assessment of the infection rate of a virus is key to monitor the evolution of an epidemic. However, such variable is not accessible to direct measurement and its estimation requires the solution of a difficult inverse problem. In particular, being the result not only of biological but also of social factors, the transmission dynamics can vary significantly in time. This makes questionable the use of parametric models which could be unable to capture their full complexity. In this paper we exploit compartmental models which include important COVID-19 peculiarities (like the presence of asymptomatic individuals) and allow the infection rate to assume any continuous-time profile. We show that these models are universal, i.e. capable to reproduce exactly any epidemic evolution, and extract from them closed-form expressions of the infection rate time-course. Building upon such expressions, we then design a regularized estimator able to reconstruct COVID-19 transmission dynamics in continuous-time. Using real data collected in Italy, our technique proves to be an useful tool to monitor COVID-19 transmission dynamics and to predict and assess the effect of lockdown restrictions. Elsevier Ltd. 2022-06 2022-04-02 /pmc/articles/PMC8976198/ /pubmed/35400084 http://dx.doi.org/10.1016/j.automatica.2022.110265 Text en © 2022 Elsevier Ltd. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Brief Paper
Bisiacco, Mauro
Pillonetto, Gianluigi
Cobelli, Claudio
Closed-form expressions and nonparametric estimation of COVID-19 infection rate()
title Closed-form expressions and nonparametric estimation of COVID-19 infection rate()
title_full Closed-form expressions and nonparametric estimation of COVID-19 infection rate()
title_fullStr Closed-form expressions and nonparametric estimation of COVID-19 infection rate()
title_full_unstemmed Closed-form expressions and nonparametric estimation of COVID-19 infection rate()
title_short Closed-form expressions and nonparametric estimation of COVID-19 infection rate()
title_sort closed-form expressions and nonparametric estimation of covid-19 infection rate()
topic Brief Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8976198/
https://www.ncbi.nlm.nih.gov/pubmed/35400084
http://dx.doi.org/10.1016/j.automatica.2022.110265
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