Cargando…

Sorting biotic and abiotic stresses on wild rocket by leaf-image hyperspectral data mining with an artificial intelligence model

BACKGROUND: Wild rocket (Diplotaxis tenuifolia) is prone to soil-borne stresses under intensive cultivation systems devoted to ready-to-eat salad chain, increasing needs for external inputs. Early detection of the abiotic and biotic stresses by using digital reflectance-based probes may allow optimi...

Descripción completa

Detalles Bibliográficos
Autores principales: Navarro, Alejandra, Nicastro, Nicola, Costa, Corrado, Pentangelo, Alfonso, Cardarelli, Mariateresa, Ortenzi, Luciano, Pallottino, Federico, Cardi, Teodoro, Pane, Catello
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8977030/
https://www.ncbi.nlm.nih.gov/pubmed/35366940
http://dx.doi.org/10.1186/s13007-022-00880-4
_version_ 1784680688182624256
author Navarro, Alejandra
Nicastro, Nicola
Costa, Corrado
Pentangelo, Alfonso
Cardarelli, Mariateresa
Ortenzi, Luciano
Pallottino, Federico
Cardi, Teodoro
Pane, Catello
author_facet Navarro, Alejandra
Nicastro, Nicola
Costa, Corrado
Pentangelo, Alfonso
Cardarelli, Mariateresa
Ortenzi, Luciano
Pallottino, Federico
Cardi, Teodoro
Pane, Catello
author_sort Navarro, Alejandra
collection PubMed
description BACKGROUND: Wild rocket (Diplotaxis tenuifolia) is prone to soil-borne stresses under intensive cultivation systems devoted to ready-to-eat salad chain, increasing needs for external inputs. Early detection of the abiotic and biotic stresses by using digital reflectance-based probes may allow optimization and enhance performances of the mitigation strategies. METHODS: Hyperspectral image analysis was applied to D. tenuifolia potted plants subjected, in a greenhouse experiment, to five treatments for one week: a control treatment watered to 100% water holding capacity, two biotic stresses: Fusarium wilting and Rhizoctonia rotting, and two abiotic stresses: water deficit and salinity. Leaf hyperspectral fingerprints were submitted to an artificial intelligence pipeline for training and validating image-based classification models able to work in the stress range. Spectral investigation was corroborated by pertaining physiological parameters. RESULTS: Water status was mainly affected by water deficit treatment, followed by fungal diseases, while salinity did not change water relations of wild rocket plants compared to control treatment. Biotic stresses triggered discoloration in plants just in a week after application of the treatments, as evidenced by the colour space coordinates and pigment contents values. Some vegetation indices, calculated on the bases of the reflectance data, targeted on plant vitality and chlorophyll content, healthiness, and carotenoid content, agreed with the patterns of variations observed for the physiological parameters. Artificial neural network helped selection of VIS (492–504, 540–568 and 712–720 nm) and NIR (855, 900–908 and 970 nm) bands, whose read reflectance contributed to discriminate stresses by imaging. CONCLUSIONS: This study provided significative spectral information linked to the assessed stresses, allowing the identification of narrowed spectral regions and single wavelengths due to changes in photosynthetically active pigments and in water status revealing the etiological cause. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s13007-022-00880-4.
format Online
Article
Text
id pubmed-8977030
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher BioMed Central
record_format MEDLINE/PubMed
spelling pubmed-89770302022-04-04 Sorting biotic and abiotic stresses on wild rocket by leaf-image hyperspectral data mining with an artificial intelligence model Navarro, Alejandra Nicastro, Nicola Costa, Corrado Pentangelo, Alfonso Cardarelli, Mariateresa Ortenzi, Luciano Pallottino, Federico Cardi, Teodoro Pane, Catello Plant Methods Research BACKGROUND: Wild rocket (Diplotaxis tenuifolia) is prone to soil-borne stresses under intensive cultivation systems devoted to ready-to-eat salad chain, increasing needs for external inputs. Early detection of the abiotic and biotic stresses by using digital reflectance-based probes may allow optimization and enhance performances of the mitigation strategies. METHODS: Hyperspectral image analysis was applied to D. tenuifolia potted plants subjected, in a greenhouse experiment, to five treatments for one week: a control treatment watered to 100% water holding capacity, two biotic stresses: Fusarium wilting and Rhizoctonia rotting, and two abiotic stresses: water deficit and salinity. Leaf hyperspectral fingerprints were submitted to an artificial intelligence pipeline for training and validating image-based classification models able to work in the stress range. Spectral investigation was corroborated by pertaining physiological parameters. RESULTS: Water status was mainly affected by water deficit treatment, followed by fungal diseases, while salinity did not change water relations of wild rocket plants compared to control treatment. Biotic stresses triggered discoloration in plants just in a week after application of the treatments, as evidenced by the colour space coordinates and pigment contents values. Some vegetation indices, calculated on the bases of the reflectance data, targeted on plant vitality and chlorophyll content, healthiness, and carotenoid content, agreed with the patterns of variations observed for the physiological parameters. Artificial neural network helped selection of VIS (492–504, 540–568 and 712–720 nm) and NIR (855, 900–908 and 970 nm) bands, whose read reflectance contributed to discriminate stresses by imaging. CONCLUSIONS: This study provided significative spectral information linked to the assessed stresses, allowing the identification of narrowed spectral regions and single wavelengths due to changes in photosynthetically active pigments and in water status revealing the etiological cause. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s13007-022-00880-4. BioMed Central 2022-04-02 /pmc/articles/PMC8977030/ /pubmed/35366940 http://dx.doi.org/10.1186/s13007-022-00880-4 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research
Navarro, Alejandra
Nicastro, Nicola
Costa, Corrado
Pentangelo, Alfonso
Cardarelli, Mariateresa
Ortenzi, Luciano
Pallottino, Federico
Cardi, Teodoro
Pane, Catello
Sorting biotic and abiotic stresses on wild rocket by leaf-image hyperspectral data mining with an artificial intelligence model
title Sorting biotic and abiotic stresses on wild rocket by leaf-image hyperspectral data mining with an artificial intelligence model
title_full Sorting biotic and abiotic stresses on wild rocket by leaf-image hyperspectral data mining with an artificial intelligence model
title_fullStr Sorting biotic and abiotic stresses on wild rocket by leaf-image hyperspectral data mining with an artificial intelligence model
title_full_unstemmed Sorting biotic and abiotic stresses on wild rocket by leaf-image hyperspectral data mining with an artificial intelligence model
title_short Sorting biotic and abiotic stresses on wild rocket by leaf-image hyperspectral data mining with an artificial intelligence model
title_sort sorting biotic and abiotic stresses on wild rocket by leaf-image hyperspectral data mining with an artificial intelligence model
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8977030/
https://www.ncbi.nlm.nih.gov/pubmed/35366940
http://dx.doi.org/10.1186/s13007-022-00880-4
work_keys_str_mv AT navarroalejandra sortingbioticandabioticstressesonwildrocketbyleafimagehyperspectraldataminingwithanartificialintelligencemodel
AT nicastronicola sortingbioticandabioticstressesonwildrocketbyleafimagehyperspectraldataminingwithanartificialintelligencemodel
AT costacorrado sortingbioticandabioticstressesonwildrocketbyleafimagehyperspectraldataminingwithanartificialintelligencemodel
AT pentangeloalfonso sortingbioticandabioticstressesonwildrocketbyleafimagehyperspectraldataminingwithanartificialintelligencemodel
AT cardarellimariateresa sortingbioticandabioticstressesonwildrocketbyleafimagehyperspectraldataminingwithanartificialintelligencemodel
AT ortenziluciano sortingbioticandabioticstressesonwildrocketbyleafimagehyperspectraldataminingwithanartificialintelligencemodel
AT pallottinofederico sortingbioticandabioticstressesonwildrocketbyleafimagehyperspectraldataminingwithanartificialintelligencemodel
AT carditeodoro sortingbioticandabioticstressesonwildrocketbyleafimagehyperspectraldataminingwithanartificialintelligencemodel
AT panecatello sortingbioticandabioticstressesonwildrocketbyleafimagehyperspectraldataminingwithanartificialintelligencemodel