Cargando…

In Silico Analysis of the Correlation of KIF2C with Prognosis and Immune Infiltration in Glioma

Glioblastoma (GBM) is one of the most commonly pivotal malignant caners. Numerous reports have revealed the crucial roles of immune infiltration in the initiation and progression of GBM. In this study, we first identified differentially expressed genes (DEGs) in the progression of GBM using CGGA dat...

Descripción completa

Detalles Bibliográficos
Autores principales: Tu, Binfeng, Xiang, Huali, Li, Min, Zhong, Fangping, Fang, Meng, Yan, Wangjun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8977321/
https://www.ncbi.nlm.nih.gov/pubmed/35387222
http://dx.doi.org/10.1155/2022/6320828
_version_ 1784680738024587264
author Tu, Binfeng
Xiang, Huali
Li, Min
Zhong, Fangping
Fang, Meng
Yan, Wangjun
author_facet Tu, Binfeng
Xiang, Huali
Li, Min
Zhong, Fangping
Fang, Meng
Yan, Wangjun
author_sort Tu, Binfeng
collection PubMed
description Glioblastoma (GBM) is one of the most commonly pivotal malignant caners. Numerous reports have revealed the crucial roles of immune infiltration in the initiation and progression of GBM. In this study, we first identified differentially expressed genes (DEGs) in the progression of GBM using CGGA databases. Totally, 156 upregulated DEGs and 251 downregulated DEGs were revealed. By constructing a protein-protein interaction network, KIF2C was identified as a hub gene in GBM. Further analysis revealed an evidently positive association existing in KIF2C expression and the advanced stages of gliomas. Higher expression of KIF2C was in WHO grade IV samples relative to that in grade III and grade II samples. In addition, our results showed that KIF2C was higher in IDH1 wild-type samples than IDH1 mutant glioma samples, in 1p/19q noncodel samples than 1p/19q code glioma samples, and in recurrent samples than primary glioma samples. Moreover, our results showed that higher expression of KIF2C correlated with shorter survival time in both primary and recurrent gliomas and could act as a potential biomarker for the prognosis of GBM. Further analysis demonstrated that higher expression of KIF2C was related to higher levels of endothelial cell, T cell CD8+ naïve, common lymphoid progenitor, T cell CD4+ Th2, T cell CD4+ Th2, macrophage, macrophage M1, T cell CD4+ memory, and T cell CD4+ effector memory, but was related to lower levels of NK cell, B cell plasma, T cell CD4+ Th1, T cell regulatory (Tregs), neutrophil, and T cell NK. We thought this study could provide potential biomarkers for the prediction of prognosis and immune infiltration of gliomas.
format Online
Article
Text
id pubmed-8977321
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Hindawi
record_format MEDLINE/PubMed
spelling pubmed-89773212022-04-05 In Silico Analysis of the Correlation of KIF2C with Prognosis and Immune Infiltration in Glioma Tu, Binfeng Xiang, Huali Li, Min Zhong, Fangping Fang, Meng Yan, Wangjun Comput Math Methods Med Research Article Glioblastoma (GBM) is one of the most commonly pivotal malignant caners. Numerous reports have revealed the crucial roles of immune infiltration in the initiation and progression of GBM. In this study, we first identified differentially expressed genes (DEGs) in the progression of GBM using CGGA databases. Totally, 156 upregulated DEGs and 251 downregulated DEGs were revealed. By constructing a protein-protein interaction network, KIF2C was identified as a hub gene in GBM. Further analysis revealed an evidently positive association existing in KIF2C expression and the advanced stages of gliomas. Higher expression of KIF2C was in WHO grade IV samples relative to that in grade III and grade II samples. In addition, our results showed that KIF2C was higher in IDH1 wild-type samples than IDH1 mutant glioma samples, in 1p/19q noncodel samples than 1p/19q code glioma samples, and in recurrent samples than primary glioma samples. Moreover, our results showed that higher expression of KIF2C correlated with shorter survival time in both primary and recurrent gliomas and could act as a potential biomarker for the prognosis of GBM. Further analysis demonstrated that higher expression of KIF2C was related to higher levels of endothelial cell, T cell CD8+ naïve, common lymphoid progenitor, T cell CD4+ Th2, T cell CD4+ Th2, macrophage, macrophage M1, T cell CD4+ memory, and T cell CD4+ effector memory, but was related to lower levels of NK cell, B cell plasma, T cell CD4+ Th1, T cell regulatory (Tregs), neutrophil, and T cell NK. We thought this study could provide potential biomarkers for the prediction of prognosis and immune infiltration of gliomas. Hindawi 2022-03-27 /pmc/articles/PMC8977321/ /pubmed/35387222 http://dx.doi.org/10.1155/2022/6320828 Text en Copyright © 2022 Binfeng Tu et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Tu, Binfeng
Xiang, Huali
Li, Min
Zhong, Fangping
Fang, Meng
Yan, Wangjun
In Silico Analysis of the Correlation of KIF2C with Prognosis and Immune Infiltration in Glioma
title In Silico Analysis of the Correlation of KIF2C with Prognosis and Immune Infiltration in Glioma
title_full In Silico Analysis of the Correlation of KIF2C with Prognosis and Immune Infiltration in Glioma
title_fullStr In Silico Analysis of the Correlation of KIF2C with Prognosis and Immune Infiltration in Glioma
title_full_unstemmed In Silico Analysis of the Correlation of KIF2C with Prognosis and Immune Infiltration in Glioma
title_short In Silico Analysis of the Correlation of KIF2C with Prognosis and Immune Infiltration in Glioma
title_sort in silico analysis of the correlation of kif2c with prognosis and immune infiltration in glioma
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8977321/
https://www.ncbi.nlm.nih.gov/pubmed/35387222
http://dx.doi.org/10.1155/2022/6320828
work_keys_str_mv AT tubinfeng insilicoanalysisofthecorrelationofkif2cwithprognosisandimmuneinfiltrationinglioma
AT xianghuali insilicoanalysisofthecorrelationofkif2cwithprognosisandimmuneinfiltrationinglioma
AT limin insilicoanalysisofthecorrelationofkif2cwithprognosisandimmuneinfiltrationinglioma
AT zhongfangping insilicoanalysisofthecorrelationofkif2cwithprognosisandimmuneinfiltrationinglioma
AT fangmeng insilicoanalysisofthecorrelationofkif2cwithprognosisandimmuneinfiltrationinglioma
AT yanwangjun insilicoanalysisofthecorrelationofkif2cwithprognosisandimmuneinfiltrationinglioma