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Hyperspectral Monitoring of Powdery Mildew Disease Severity in Wheat Based on Machine Learning

Powdery mildew has a negative impact on wheat growth and restricts yield formation. Therefore, accurate monitoring of the disease is of great significance for the prevention and control of powdery mildew to protect world food security. The canopy spectral reflectance was obtained using a ground feat...

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Autores principales: Feng, Zi-Heng, Wang, Lu-Yuan, Yang, Zhe-Qing, Zhang, Yan-Yan, Li, Xiao, Song, Li, He, Li, Duan, Jian-Zhao, Feng, Wei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8977770/
https://www.ncbi.nlm.nih.gov/pubmed/35386677
http://dx.doi.org/10.3389/fpls.2022.828454
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author Feng, Zi-Heng
Wang, Lu-Yuan
Yang, Zhe-Qing
Zhang, Yan-Yan
Li, Xiao
Song, Li
He, Li
Duan, Jian-Zhao
Feng, Wei
author_facet Feng, Zi-Heng
Wang, Lu-Yuan
Yang, Zhe-Qing
Zhang, Yan-Yan
Li, Xiao
Song, Li
He, Li
Duan, Jian-Zhao
Feng, Wei
author_sort Feng, Zi-Heng
collection PubMed
description Powdery mildew has a negative impact on wheat growth and restricts yield formation. Therefore, accurate monitoring of the disease is of great significance for the prevention and control of powdery mildew to protect world food security. The canopy spectral reflectance was obtained using a ground feature hyperspectrometer during the flowering and filling periods of wheat, and then the Savitzky–Golay method was used to smooth the measured spectral data, and as original reflectivity (OR). Firstly, the OR was spectrally transformed using the mean centralization (MC), multivariate scattering correction (MSC), and standard normal variate transform (SNV) methods. Secondly, the feature bands of above four transformed spectral data were extracted through a combination of the Competitive Adaptive Reweighted Sampling (CARS) and Successive Projections Algorithm (SPA) algorithms. Finally, partial least square regression (PLSR), support vector regression (SVR), and random forest regression (RFR) were used to construct an optimal monitoring model for wheat powdery mildew disease index (mean disease index, mDI). The results showed that after Pearson correlation, two-band optimization combinations and machine learning method modeling comparisons, the comprehensive performance of the MC spectrum data was the best, and it was a better method for pretreating disease spectrum data. The transformed spectral data combined with the CARS–SPA algorithm was able to extract the characteristic bands more effectively. The number of bands screened was more than the number of bands extracted by the OR data, and the band positions were more evenly distributed. In comparison of different machine learning modeling methods, the RFR model performed the best (coefficient of determination, R(2) = 0.741–0.852), while the SVR and PLSR models performed similarly (R(2) = 0.733–0.836). Taken together, the estimation accuracy of spectral data transformation using the MC method combined with the RFR model (MC-RFR) was the highest, the model R(2) was 0.849–0.852, and the root mean square error (RMSE) and the mean absolute error (MAE) ranged from 2.084 to 2.177 and 1.684 to 1.777, respectively. Compared with the OR combined with the RFR model (OR-RFR), the R(2) increased by 14.39%, and the R(2) of RMSE and MAE decreased by 23.9 and 27.87%. Also, the monitoring accuracy of flowering stage is better than that of grain filling stage, which is due to the relative stability of canopy structure in flowering stage. It can be seen that without changing the shape of the spectral curve, and that the use of MC to preprocess spectral data, the use of CARS and SPA algorithms to extract characteristic bands, and the use of RFR modeling methods to enhance the synergy between multiple variables, and the established model (MC-CARS-SPA-RFR) can better extract the covariant relationship between the canopy spectrum and the disease, thereby improving the monitoring accuracy of wheat powdery mildew. The research results of this study provide ideas and methods for realizing high-precision remote sensing monitoring of crop disease status.
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spelling pubmed-89777702022-04-05 Hyperspectral Monitoring of Powdery Mildew Disease Severity in Wheat Based on Machine Learning Feng, Zi-Heng Wang, Lu-Yuan Yang, Zhe-Qing Zhang, Yan-Yan Li, Xiao Song, Li He, Li Duan, Jian-Zhao Feng, Wei Front Plant Sci Plant Science Powdery mildew has a negative impact on wheat growth and restricts yield formation. Therefore, accurate monitoring of the disease is of great significance for the prevention and control of powdery mildew to protect world food security. The canopy spectral reflectance was obtained using a ground feature hyperspectrometer during the flowering and filling periods of wheat, and then the Savitzky–Golay method was used to smooth the measured spectral data, and as original reflectivity (OR). Firstly, the OR was spectrally transformed using the mean centralization (MC), multivariate scattering correction (MSC), and standard normal variate transform (SNV) methods. Secondly, the feature bands of above four transformed spectral data were extracted through a combination of the Competitive Adaptive Reweighted Sampling (CARS) and Successive Projections Algorithm (SPA) algorithms. Finally, partial least square regression (PLSR), support vector regression (SVR), and random forest regression (RFR) were used to construct an optimal monitoring model for wheat powdery mildew disease index (mean disease index, mDI). The results showed that after Pearson correlation, two-band optimization combinations and machine learning method modeling comparisons, the comprehensive performance of the MC spectrum data was the best, and it was a better method for pretreating disease spectrum data. The transformed spectral data combined with the CARS–SPA algorithm was able to extract the characteristic bands more effectively. The number of bands screened was more than the number of bands extracted by the OR data, and the band positions were more evenly distributed. In comparison of different machine learning modeling methods, the RFR model performed the best (coefficient of determination, R(2) = 0.741–0.852), while the SVR and PLSR models performed similarly (R(2) = 0.733–0.836). Taken together, the estimation accuracy of spectral data transformation using the MC method combined with the RFR model (MC-RFR) was the highest, the model R(2) was 0.849–0.852, and the root mean square error (RMSE) and the mean absolute error (MAE) ranged from 2.084 to 2.177 and 1.684 to 1.777, respectively. Compared with the OR combined with the RFR model (OR-RFR), the R(2) increased by 14.39%, and the R(2) of RMSE and MAE decreased by 23.9 and 27.87%. Also, the monitoring accuracy of flowering stage is better than that of grain filling stage, which is due to the relative stability of canopy structure in flowering stage. It can be seen that without changing the shape of the spectral curve, and that the use of MC to preprocess spectral data, the use of CARS and SPA algorithms to extract characteristic bands, and the use of RFR modeling methods to enhance the synergy between multiple variables, and the established model (MC-CARS-SPA-RFR) can better extract the covariant relationship between the canopy spectrum and the disease, thereby improving the monitoring accuracy of wheat powdery mildew. The research results of this study provide ideas and methods for realizing high-precision remote sensing monitoring of crop disease status. Frontiers Media S.A. 2022-03-21 /pmc/articles/PMC8977770/ /pubmed/35386677 http://dx.doi.org/10.3389/fpls.2022.828454 Text en Copyright © 2022 Feng, Wang, Yang, Zhang, Li, Song, He, Duan and Feng. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Plant Science
Feng, Zi-Heng
Wang, Lu-Yuan
Yang, Zhe-Qing
Zhang, Yan-Yan
Li, Xiao
Song, Li
He, Li
Duan, Jian-Zhao
Feng, Wei
Hyperspectral Monitoring of Powdery Mildew Disease Severity in Wheat Based on Machine Learning
title Hyperspectral Monitoring of Powdery Mildew Disease Severity in Wheat Based on Machine Learning
title_full Hyperspectral Monitoring of Powdery Mildew Disease Severity in Wheat Based on Machine Learning
title_fullStr Hyperspectral Monitoring of Powdery Mildew Disease Severity in Wheat Based on Machine Learning
title_full_unstemmed Hyperspectral Monitoring of Powdery Mildew Disease Severity in Wheat Based on Machine Learning
title_short Hyperspectral Monitoring of Powdery Mildew Disease Severity in Wheat Based on Machine Learning
title_sort hyperspectral monitoring of powdery mildew disease severity in wheat based on machine learning
topic Plant Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8977770/
https://www.ncbi.nlm.nih.gov/pubmed/35386677
http://dx.doi.org/10.3389/fpls.2022.828454
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