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Common and Rare 5′UTR Variants Altering Upstream Open Reading Frames in Cardiovascular Genomics

High-throughput sequencing (HTS) technologies are revolutionizing the research and molecular diagnosis landscape by allowing the exploration of millions of nucleotide sequences at an unprecedented scale. These technologies are of particular interest in the identification of genetic variations contri...

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Autores principales: Soukarieh, Omar, Meguerditchian, Caroline, Proust, Carole, Aïssi, Dylan, Eyries, Mélanie, Goyenvalle, Aurélie, Trégouët, David-Alexandre
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8977850/
https://www.ncbi.nlm.nih.gov/pubmed/35387445
http://dx.doi.org/10.3389/fcvm.2022.841032
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author Soukarieh, Omar
Meguerditchian, Caroline
Proust, Carole
Aïssi, Dylan
Eyries, Mélanie
Goyenvalle, Aurélie
Trégouët, David-Alexandre
author_facet Soukarieh, Omar
Meguerditchian, Caroline
Proust, Carole
Aïssi, Dylan
Eyries, Mélanie
Goyenvalle, Aurélie
Trégouët, David-Alexandre
author_sort Soukarieh, Omar
collection PubMed
description High-throughput sequencing (HTS) technologies are revolutionizing the research and molecular diagnosis landscape by allowing the exploration of millions of nucleotide sequences at an unprecedented scale. These technologies are of particular interest in the identification of genetic variations contributing to the risk of rare (Mendelian) and common (multifactorial) human diseases. So far, they have led to numerous successes in identifying rare disease-causing mutations in coding regions, but few in non-coding regions that include introns, untranslated (UTR), and intergenic regions. One class of neglected non-coding variations is that of 5′UTR variants that alter upstream open reading frames (upORFs) of the coding sequence (CDS) of a natural protein coding transcript. Following a brief summary of the molecular bases of the origin and functions of upORFs, we will first review known 5′UTR variations altering upORFs and causing rare cardiovascular disorders (CVDs). We will then investigate whether upORF-affecting single nucleotide polymorphisms could be good candidates for explaining association signals detected in the context of genome-wide association studies for common complex CVDs.
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spelling pubmed-89778502022-04-05 Common and Rare 5′UTR Variants Altering Upstream Open Reading Frames in Cardiovascular Genomics Soukarieh, Omar Meguerditchian, Caroline Proust, Carole Aïssi, Dylan Eyries, Mélanie Goyenvalle, Aurélie Trégouët, David-Alexandre Front Cardiovasc Med Cardiovascular Medicine High-throughput sequencing (HTS) technologies are revolutionizing the research and molecular diagnosis landscape by allowing the exploration of millions of nucleotide sequences at an unprecedented scale. These technologies are of particular interest in the identification of genetic variations contributing to the risk of rare (Mendelian) and common (multifactorial) human diseases. So far, they have led to numerous successes in identifying rare disease-causing mutations in coding regions, but few in non-coding regions that include introns, untranslated (UTR), and intergenic regions. One class of neglected non-coding variations is that of 5′UTR variants that alter upstream open reading frames (upORFs) of the coding sequence (CDS) of a natural protein coding transcript. Following a brief summary of the molecular bases of the origin and functions of upORFs, we will first review known 5′UTR variations altering upORFs and causing rare cardiovascular disorders (CVDs). We will then investigate whether upORF-affecting single nucleotide polymorphisms could be good candidates for explaining association signals detected in the context of genome-wide association studies for common complex CVDs. Frontiers Media S.A. 2022-03-21 /pmc/articles/PMC8977850/ /pubmed/35387445 http://dx.doi.org/10.3389/fcvm.2022.841032 Text en Copyright © 2022 Soukarieh, Meguerditchian, Proust, Aïssi, Eyries, Goyenvalle and Trégouët. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Cardiovascular Medicine
Soukarieh, Omar
Meguerditchian, Caroline
Proust, Carole
Aïssi, Dylan
Eyries, Mélanie
Goyenvalle, Aurélie
Trégouët, David-Alexandre
Common and Rare 5′UTR Variants Altering Upstream Open Reading Frames in Cardiovascular Genomics
title Common and Rare 5′UTR Variants Altering Upstream Open Reading Frames in Cardiovascular Genomics
title_full Common and Rare 5′UTR Variants Altering Upstream Open Reading Frames in Cardiovascular Genomics
title_fullStr Common and Rare 5′UTR Variants Altering Upstream Open Reading Frames in Cardiovascular Genomics
title_full_unstemmed Common and Rare 5′UTR Variants Altering Upstream Open Reading Frames in Cardiovascular Genomics
title_short Common and Rare 5′UTR Variants Altering Upstream Open Reading Frames in Cardiovascular Genomics
title_sort common and rare 5′utr variants altering upstream open reading frames in cardiovascular genomics
topic Cardiovascular Medicine
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8977850/
https://www.ncbi.nlm.nih.gov/pubmed/35387445
http://dx.doi.org/10.3389/fcvm.2022.841032
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