Cargando…
Common and Rare 5′UTR Variants Altering Upstream Open Reading Frames in Cardiovascular Genomics
High-throughput sequencing (HTS) technologies are revolutionizing the research and molecular diagnosis landscape by allowing the exploration of millions of nucleotide sequences at an unprecedented scale. These technologies are of particular interest in the identification of genetic variations contri...
Autores principales: | , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8977850/ https://www.ncbi.nlm.nih.gov/pubmed/35387445 http://dx.doi.org/10.3389/fcvm.2022.841032 |
_version_ | 1784680854091464704 |
---|---|
author | Soukarieh, Omar Meguerditchian, Caroline Proust, Carole Aïssi, Dylan Eyries, Mélanie Goyenvalle, Aurélie Trégouët, David-Alexandre |
author_facet | Soukarieh, Omar Meguerditchian, Caroline Proust, Carole Aïssi, Dylan Eyries, Mélanie Goyenvalle, Aurélie Trégouët, David-Alexandre |
author_sort | Soukarieh, Omar |
collection | PubMed |
description | High-throughput sequencing (HTS) technologies are revolutionizing the research and molecular diagnosis landscape by allowing the exploration of millions of nucleotide sequences at an unprecedented scale. These technologies are of particular interest in the identification of genetic variations contributing to the risk of rare (Mendelian) and common (multifactorial) human diseases. So far, they have led to numerous successes in identifying rare disease-causing mutations in coding regions, but few in non-coding regions that include introns, untranslated (UTR), and intergenic regions. One class of neglected non-coding variations is that of 5′UTR variants that alter upstream open reading frames (upORFs) of the coding sequence (CDS) of a natural protein coding transcript. Following a brief summary of the molecular bases of the origin and functions of upORFs, we will first review known 5′UTR variations altering upORFs and causing rare cardiovascular disorders (CVDs). We will then investigate whether upORF-affecting single nucleotide polymorphisms could be good candidates for explaining association signals detected in the context of genome-wide association studies for common complex CVDs. |
format | Online Article Text |
id | pubmed-8977850 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-89778502022-04-05 Common and Rare 5′UTR Variants Altering Upstream Open Reading Frames in Cardiovascular Genomics Soukarieh, Omar Meguerditchian, Caroline Proust, Carole Aïssi, Dylan Eyries, Mélanie Goyenvalle, Aurélie Trégouët, David-Alexandre Front Cardiovasc Med Cardiovascular Medicine High-throughput sequencing (HTS) technologies are revolutionizing the research and molecular diagnosis landscape by allowing the exploration of millions of nucleotide sequences at an unprecedented scale. These technologies are of particular interest in the identification of genetic variations contributing to the risk of rare (Mendelian) and common (multifactorial) human diseases. So far, they have led to numerous successes in identifying rare disease-causing mutations in coding regions, but few in non-coding regions that include introns, untranslated (UTR), and intergenic regions. One class of neglected non-coding variations is that of 5′UTR variants that alter upstream open reading frames (upORFs) of the coding sequence (CDS) of a natural protein coding transcript. Following a brief summary of the molecular bases of the origin and functions of upORFs, we will first review known 5′UTR variations altering upORFs and causing rare cardiovascular disorders (CVDs). We will then investigate whether upORF-affecting single nucleotide polymorphisms could be good candidates for explaining association signals detected in the context of genome-wide association studies for common complex CVDs. Frontiers Media S.A. 2022-03-21 /pmc/articles/PMC8977850/ /pubmed/35387445 http://dx.doi.org/10.3389/fcvm.2022.841032 Text en Copyright © 2022 Soukarieh, Meguerditchian, Proust, Aïssi, Eyries, Goyenvalle and Trégouët. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Cardiovascular Medicine Soukarieh, Omar Meguerditchian, Caroline Proust, Carole Aïssi, Dylan Eyries, Mélanie Goyenvalle, Aurélie Trégouët, David-Alexandre Common and Rare 5′UTR Variants Altering Upstream Open Reading Frames in Cardiovascular Genomics |
title | Common and Rare 5′UTR Variants Altering Upstream Open Reading Frames in Cardiovascular Genomics |
title_full | Common and Rare 5′UTR Variants Altering Upstream Open Reading Frames in Cardiovascular Genomics |
title_fullStr | Common and Rare 5′UTR Variants Altering Upstream Open Reading Frames in Cardiovascular Genomics |
title_full_unstemmed | Common and Rare 5′UTR Variants Altering Upstream Open Reading Frames in Cardiovascular Genomics |
title_short | Common and Rare 5′UTR Variants Altering Upstream Open Reading Frames in Cardiovascular Genomics |
title_sort | common and rare 5′utr variants altering upstream open reading frames in cardiovascular genomics |
topic | Cardiovascular Medicine |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8977850/ https://www.ncbi.nlm.nih.gov/pubmed/35387445 http://dx.doi.org/10.3389/fcvm.2022.841032 |
work_keys_str_mv | AT soukariehomar commonandrare5utrvariantsalteringupstreamopenreadingframesincardiovasculargenomics AT meguerditchiancaroline commonandrare5utrvariantsalteringupstreamopenreadingframesincardiovasculargenomics AT proustcarole commonandrare5utrvariantsalteringupstreamopenreadingframesincardiovasculargenomics AT aissidylan commonandrare5utrvariantsalteringupstreamopenreadingframesincardiovasculargenomics AT eyriesmelanie commonandrare5utrvariantsalteringupstreamopenreadingframesincardiovasculargenomics AT goyenvalleaurelie commonandrare5utrvariantsalteringupstreamopenreadingframesincardiovasculargenomics AT tregouetdavidalexandre commonandrare5utrvariantsalteringupstreamopenreadingframesincardiovasculargenomics |