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MSAL-Net: improve accurate segmentation of nuclei in histopathology images by multiscale attention learning network

BACKGROUND: The digital pathology images obtain the essential information about the patient’s disease, and the automated nuclei segmentation results can help doctors make better decisions about diagnosing the disease. With the speedy advancement of convolutional neural networks in image processing,...

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Autores principales: Ali, Haider, Haq, Imran ul, Cui, Lei, Feng, Jun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8978355/
https://www.ncbi.nlm.nih.gov/pubmed/35379228
http://dx.doi.org/10.1186/s12911-022-01826-5
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author Ali, Haider
Haq, Imran ul
Cui, Lei
Feng, Jun
author_facet Ali, Haider
Haq, Imran ul
Cui, Lei
Feng, Jun
author_sort Ali, Haider
collection PubMed
description BACKGROUND: The digital pathology images obtain the essential information about the patient’s disease, and the automated nuclei segmentation results can help doctors make better decisions about diagnosing the disease. With the speedy advancement of convolutional neural networks in image processing, deep learning has been shown to play a significant role in the various analysis of medical images, such as nuclei segmentation, mitosis detection and segmentation etc. Recently, several U-net based methods have been developed to solve the automated nuclei segmentation problems. However, these methods fail to deal with the weak features representation from the initial layers and introduce the noise into the decoder path. In this paper, we propose a multiscale attention learning network (MSAL-Net), where the dense dilated convolutions block captures more comprehensive nuclei context information, and a newly modified decoder part is introduced, which integrates with efficient channel attention and boundary refinement modules to effectively learn spatial information for better prediction and further refine the nuclei cell of boundaries. RESULTS: Both qualitative and quantitative results are obtained on the publicly available MoNuseg dataset. Extensive experiment results verify that our proposed method significantly outperforms state-of-the-art methods as well as the vanilla Unet method in the segmentation task. Furthermore, we visually demonstrate the effect of our modified decoder part. CONCLUSION: The MSAL-Net shows superiority with a novel decoder to segment the touching and blurred background nuclei cells obtained from histopathology images with better performance for accurate decoding.
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spelling pubmed-89783552022-04-05 MSAL-Net: improve accurate segmentation of nuclei in histopathology images by multiscale attention learning network Ali, Haider Haq, Imran ul Cui, Lei Feng, Jun BMC Med Inform Decis Mak Research BACKGROUND: The digital pathology images obtain the essential information about the patient’s disease, and the automated nuclei segmentation results can help doctors make better decisions about diagnosing the disease. With the speedy advancement of convolutional neural networks in image processing, deep learning has been shown to play a significant role in the various analysis of medical images, such as nuclei segmentation, mitosis detection and segmentation etc. Recently, several U-net based methods have been developed to solve the automated nuclei segmentation problems. However, these methods fail to deal with the weak features representation from the initial layers and introduce the noise into the decoder path. In this paper, we propose a multiscale attention learning network (MSAL-Net), where the dense dilated convolutions block captures more comprehensive nuclei context information, and a newly modified decoder part is introduced, which integrates with efficient channel attention and boundary refinement modules to effectively learn spatial information for better prediction and further refine the nuclei cell of boundaries. RESULTS: Both qualitative and quantitative results are obtained on the publicly available MoNuseg dataset. Extensive experiment results verify that our proposed method significantly outperforms state-of-the-art methods as well as the vanilla Unet method in the segmentation task. Furthermore, we visually demonstrate the effect of our modified decoder part. CONCLUSION: The MSAL-Net shows superiority with a novel decoder to segment the touching and blurred background nuclei cells obtained from histopathology images with better performance for accurate decoding. BioMed Central 2022-04-04 /pmc/articles/PMC8978355/ /pubmed/35379228 http://dx.doi.org/10.1186/s12911-022-01826-5 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research
Ali, Haider
Haq, Imran ul
Cui, Lei
Feng, Jun
MSAL-Net: improve accurate segmentation of nuclei in histopathology images by multiscale attention learning network
title MSAL-Net: improve accurate segmentation of nuclei in histopathology images by multiscale attention learning network
title_full MSAL-Net: improve accurate segmentation of nuclei in histopathology images by multiscale attention learning network
title_fullStr MSAL-Net: improve accurate segmentation of nuclei in histopathology images by multiscale attention learning network
title_full_unstemmed MSAL-Net: improve accurate segmentation of nuclei in histopathology images by multiscale attention learning network
title_short MSAL-Net: improve accurate segmentation of nuclei in histopathology images by multiscale attention learning network
title_sort msal-net: improve accurate segmentation of nuclei in histopathology images by multiscale attention learning network
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8978355/
https://www.ncbi.nlm.nih.gov/pubmed/35379228
http://dx.doi.org/10.1186/s12911-022-01826-5
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