Characterization of the complete plastome of Delphinium montanum, a polyploid, endemic and endangered Pyrenean Larkspur

Delphinium montanum DC. 1815, is an endangered larkspur endemic to the Eastern Pyrenees. For biogeographic and conservation purpose, a hybrid assembly approach based on long- and short-read genomic data allowed us to successfully assemble whole plastid genome of Delphinium montanum. The complete pla...

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Autores principales: Salvado, Pascaline, Llauro, Christel, Carpentier, Marie-Christine, Delorme-Hinoux, Valérie, Bertrand, Joris A. M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2022
Materias:
MitoGenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8979512/
https://www.ncbi.nlm.nih.gov/pubmed/35386636
http://dx.doi.org/10.1080/23802359.2022.2057248
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author Salvado, Pascaline
Llauro, Christel
Carpentier, Marie-Christine
Delorme-Hinoux, Valérie
Bertrand, Joris A. M.
author_facet Salvado, Pascaline
Llauro, Christel
Carpentier, Marie-Christine
Delorme-Hinoux, Valérie
Bertrand, Joris A. M.
author_sort Salvado, Pascaline
collection PubMed
description Delphinium montanum DC. 1815, is an endangered larkspur endemic to the Eastern Pyrenees. For biogeographic and conservation purpose, a hybrid assembly approach based on long- and short-read genomic data allowed us to successfully assemble whole plastid genome of Delphinium montanum. The complete plastome is 154,185 bp in length, consisting of a pair of inverted repeats (IRs) of 26,559 bp, a large single-copy (LSC) region and a small single-copy region (SSC) of 84,746 and 16,320 bp, respectively. It was found to contain 136 genes, including 84 protein-coding genes, 44 trRNA genes and 8 rRNA genes. The overall GC content of the plastid genome is 38.3%. Phylogenetic inference supports the polyphyly of the Delphinium genus.
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spelling pubmed-89795122022-04-05 Characterization of the complete plastome of Delphinium montanum, a polyploid, endemic and endangered Pyrenean Larkspur Salvado, Pascaline Llauro, Christel Carpentier, Marie-Christine Delorme-Hinoux, Valérie Bertrand, Joris A. M. Mitochondrial DNA B Resour MitoGenome Announcement Delphinium montanum DC. 1815, is an endangered larkspur endemic to the Eastern Pyrenees. For biogeographic and conservation purpose, a hybrid assembly approach based on long- and short-read genomic data allowed us to successfully assemble whole plastid genome of Delphinium montanum. The complete plastome is 154,185 bp in length, consisting of a pair of inverted repeats (IRs) of 26,559 bp, a large single-copy (LSC) region and a small single-copy region (SSC) of 84,746 and 16,320 bp, respectively. It was found to contain 136 genes, including 84 protein-coding genes, 44 trRNA genes and 8 rRNA genes. The overall GC content of the plastid genome is 38.3%. Phylogenetic inference supports the polyphyly of the Delphinium genus. Taylor & Francis 2022-04-03 /pmc/articles/PMC8979512/ /pubmed/35386636 http://dx.doi.org/10.1080/23802359.2022.2057248 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle MitoGenome Announcement
Salvado, Pascaline
Llauro, Christel
Carpentier, Marie-Christine
Delorme-Hinoux, Valérie
Bertrand, Joris A. M.
Characterization of the complete plastome of Delphinium montanum, a polyploid, endemic and endangered Pyrenean Larkspur
title Characterization of the complete plastome of Delphinium montanum, a polyploid, endemic and endangered Pyrenean Larkspur
title_full Characterization of the complete plastome of Delphinium montanum, a polyploid, endemic and endangered Pyrenean Larkspur
title_fullStr Characterization of the complete plastome of Delphinium montanum, a polyploid, endemic and endangered Pyrenean Larkspur
title_full_unstemmed Characterization of the complete plastome of Delphinium montanum, a polyploid, endemic and endangered Pyrenean Larkspur
title_short Characterization of the complete plastome of Delphinium montanum, a polyploid, endemic and endangered Pyrenean Larkspur
title_sort characterization of the complete plastome of delphinium montanum, a polyploid, endemic and endangered pyrenean larkspur
topic MitoGenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8979512/
https://www.ncbi.nlm.nih.gov/pubmed/35386636
http://dx.doi.org/10.1080/23802359.2022.2057248
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