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Cross-Attention and Deep Supervision UNet for Lesion Segmentation of Chronic Stroke

Stroke is an acute cerebrovascular disease with high incidence, high mortality, and high disability rate. Determining the location and volume of the disease in MR images promotes accurate stroke diagnosis and surgical planning. Therefore, the automatic recognition and segmentation of stroke lesions...

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Autores principales: Sheng, Manjin, Xu, Wenjie, Yang, Jane, Chen, Zhongjie
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8980944/
https://www.ncbi.nlm.nih.gov/pubmed/35392415
http://dx.doi.org/10.3389/fnins.2022.836412
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author Sheng, Manjin
Xu, Wenjie
Yang, Jane
Chen, Zhongjie
author_facet Sheng, Manjin
Xu, Wenjie
Yang, Jane
Chen, Zhongjie
author_sort Sheng, Manjin
collection PubMed
description Stroke is an acute cerebrovascular disease with high incidence, high mortality, and high disability rate. Determining the location and volume of the disease in MR images promotes accurate stroke diagnosis and surgical planning. Therefore, the automatic recognition and segmentation of stroke lesions has important clinical significance for large-scale stroke imaging analysis. There are some problems in the segmentation of stroke lesions, such as imbalance of the front and back scenes, uncertainty of position, and unclear boundary. To meet this challenge, this paper proposes a cross-attention and deep supervision UNet (CADS-UNet) to segment chronic stroke lesions from T1-weighted MR images. Specifically, we propose a cross-spatial attention module, which is different from the usual self-attention module. The location information interactively selects encode features and decode features to enrich the lost spatial focus. At the same time, the channel attention mechanism is used to screen the channel characteristics. Finally, combined with deep supervision and mixed loss, the model is supervised more accurately. We compared and verified the model on the authoritative open dataset “Anatomical Tracings of Lesions After Stroke” (Atlas), which fully proved the effectiveness of our model.
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spelling pubmed-89809442022-04-06 Cross-Attention and Deep Supervision UNet for Lesion Segmentation of Chronic Stroke Sheng, Manjin Xu, Wenjie Yang, Jane Chen, Zhongjie Front Neurosci Neuroscience Stroke is an acute cerebrovascular disease with high incidence, high mortality, and high disability rate. Determining the location and volume of the disease in MR images promotes accurate stroke diagnosis and surgical planning. Therefore, the automatic recognition and segmentation of stroke lesions has important clinical significance for large-scale stroke imaging analysis. There are some problems in the segmentation of stroke lesions, such as imbalance of the front and back scenes, uncertainty of position, and unclear boundary. To meet this challenge, this paper proposes a cross-attention and deep supervision UNet (CADS-UNet) to segment chronic stroke lesions from T1-weighted MR images. Specifically, we propose a cross-spatial attention module, which is different from the usual self-attention module. The location information interactively selects encode features and decode features to enrich the lost spatial focus. At the same time, the channel attention mechanism is used to screen the channel characteristics. Finally, combined with deep supervision and mixed loss, the model is supervised more accurately. We compared and verified the model on the authoritative open dataset “Anatomical Tracings of Lesions After Stroke” (Atlas), which fully proved the effectiveness of our model. Frontiers Media S.A. 2022-03-22 /pmc/articles/PMC8980944/ /pubmed/35392415 http://dx.doi.org/10.3389/fnins.2022.836412 Text en Copyright © 2022 Sheng, Xu, Yang and Chen. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Neuroscience
Sheng, Manjin
Xu, Wenjie
Yang, Jane
Chen, Zhongjie
Cross-Attention and Deep Supervision UNet for Lesion Segmentation of Chronic Stroke
title Cross-Attention and Deep Supervision UNet for Lesion Segmentation of Chronic Stroke
title_full Cross-Attention and Deep Supervision UNet for Lesion Segmentation of Chronic Stroke
title_fullStr Cross-Attention and Deep Supervision UNet for Lesion Segmentation of Chronic Stroke
title_full_unstemmed Cross-Attention and Deep Supervision UNet for Lesion Segmentation of Chronic Stroke
title_short Cross-Attention and Deep Supervision UNet for Lesion Segmentation of Chronic Stroke
title_sort cross-attention and deep supervision unet for lesion segmentation of chronic stroke
topic Neuroscience
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8980944/
https://www.ncbi.nlm.nih.gov/pubmed/35392415
http://dx.doi.org/10.3389/fnins.2022.836412
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