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Joint efficacy of the three biomarkers SNCA, GYPB and HBG1 for atrial fibrillation and stroke: Analysis via the support vector machine neural network

Atrial fibrillation (AF) is the most common type of persistent arrhythmia. Although its incidence has been increasing, the pathogenesis of AF in stroke remains unclear. In this study, a total of 30 participants were recruited, including 10 controls, 10 patients with AF and 10 patients with AF and st...

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Autores principales: Wang, Xiang, Meng, Xuyang, Meng, Lingbing, Guo, Ying, Li, Yi, Yang, Chenguang, Pei, Zuowei, Li, Jiahan, Wang, Fang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8980947/
https://www.ncbi.nlm.nih.gov/pubmed/35138035
http://dx.doi.org/10.1111/jcmm.17224
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author Wang, Xiang
Meng, Xuyang
Meng, Lingbing
Guo, Ying
Li, Yi
Yang, Chenguang
Pei, Zuowei
Li, Jiahan
Wang, Fang
author_facet Wang, Xiang
Meng, Xuyang
Meng, Lingbing
Guo, Ying
Li, Yi
Yang, Chenguang
Pei, Zuowei
Li, Jiahan
Wang, Fang
author_sort Wang, Xiang
collection PubMed
description Atrial fibrillation (AF) is the most common type of persistent arrhythmia. Although its incidence has been increasing, the pathogenesis of AF in stroke remains unclear. In this study, a total of 30 participants were recruited, including 10 controls, 10 patients with AF and 10 patients with AF and stroke (AF + STROKE). Differentially expressed genes (DEGs) were identified, and functional annotation of DEGs, comparative toxicogenomic database analysis associated with cardiovascular diseases, and predictions of miRNAs of hub genes were performed. Using RT‐qPCR, biological process and support vector machine neural networks, numerous DEGs were found to be related to AF. HBG1, SNCA and GYPB were found to be upregulated in the AF group. Higher expression of hub genes in AF and AF + STROKE groups was detected via RT‐PCR. Upon training the biological process neural network of SNCA and GYPB for HBG1, only small differences were detected. Based on the support vector machine, the predicted value of SNCA and GYPB for HBG1 was 0.9893. Expression of the hub genes of HBG1, SNCA and GYPB might therefore be significantly correlated to AF. These genes are involved in the incidence of AF complicated by stroke, and may serve as targets for early diagnosis and treatment.
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spelling pubmed-89809472022-04-11 Joint efficacy of the three biomarkers SNCA, GYPB and HBG1 for atrial fibrillation and stroke: Analysis via the support vector machine neural network Wang, Xiang Meng, Xuyang Meng, Lingbing Guo, Ying Li, Yi Yang, Chenguang Pei, Zuowei Li, Jiahan Wang, Fang J Cell Mol Med Original Articles Atrial fibrillation (AF) is the most common type of persistent arrhythmia. Although its incidence has been increasing, the pathogenesis of AF in stroke remains unclear. In this study, a total of 30 participants were recruited, including 10 controls, 10 patients with AF and 10 patients with AF and stroke (AF + STROKE). Differentially expressed genes (DEGs) were identified, and functional annotation of DEGs, comparative toxicogenomic database analysis associated with cardiovascular diseases, and predictions of miRNAs of hub genes were performed. Using RT‐qPCR, biological process and support vector machine neural networks, numerous DEGs were found to be related to AF. HBG1, SNCA and GYPB were found to be upregulated in the AF group. Higher expression of hub genes in AF and AF + STROKE groups was detected via RT‐PCR. Upon training the biological process neural network of SNCA and GYPB for HBG1, only small differences were detected. Based on the support vector machine, the predicted value of SNCA and GYPB for HBG1 was 0.9893. Expression of the hub genes of HBG1, SNCA and GYPB might therefore be significantly correlated to AF. These genes are involved in the incidence of AF complicated by stroke, and may serve as targets for early diagnosis and treatment. John Wiley and Sons Inc. 2022-02-09 2022-04 /pmc/articles/PMC8980947/ /pubmed/35138035 http://dx.doi.org/10.1111/jcmm.17224 Text en © 2022 The Authors. Journal of Cellular and Molecular Medicine published by Foundation for Cellular and Molecular Medicine and John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Articles
Wang, Xiang
Meng, Xuyang
Meng, Lingbing
Guo, Ying
Li, Yi
Yang, Chenguang
Pei, Zuowei
Li, Jiahan
Wang, Fang
Joint efficacy of the three biomarkers SNCA, GYPB and HBG1 for atrial fibrillation and stroke: Analysis via the support vector machine neural network
title Joint efficacy of the three biomarkers SNCA, GYPB and HBG1 for atrial fibrillation and stroke: Analysis via the support vector machine neural network
title_full Joint efficacy of the three biomarkers SNCA, GYPB and HBG1 for atrial fibrillation and stroke: Analysis via the support vector machine neural network
title_fullStr Joint efficacy of the three biomarkers SNCA, GYPB and HBG1 for atrial fibrillation and stroke: Analysis via the support vector machine neural network
title_full_unstemmed Joint efficacy of the three biomarkers SNCA, GYPB and HBG1 for atrial fibrillation and stroke: Analysis via the support vector machine neural network
title_short Joint efficacy of the three biomarkers SNCA, GYPB and HBG1 for atrial fibrillation and stroke: Analysis via the support vector machine neural network
title_sort joint efficacy of the three biomarkers snca, gypb and hbg1 for atrial fibrillation and stroke: analysis via the support vector machine neural network
topic Original Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8980947/
https://www.ncbi.nlm.nih.gov/pubmed/35138035
http://dx.doi.org/10.1111/jcmm.17224
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