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Expression profile of circRNA in peripheral blood mononuclear cells of patients with rheumatoid arthritis
BACKGROUND: Circular RNAs (circRNAs) is a newly discovered non-coding RNA that can be used as biomarkers in clinical blood samples. This study aims to screen differentially expressed circular RNAs in PBMCs of patients with rheumatoid arthritis (RA) to determine new biomarkers for the diagnosis of RA...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8981773/ https://www.ncbi.nlm.nih.gov/pubmed/35379246 http://dx.doi.org/10.1186/s12920-022-01225-9 |
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author | Lu, Huangxin Yang, Yifan Kuang, Dong Liu, Ping Yang, Junping |
author_facet | Lu, Huangxin Yang, Yifan Kuang, Dong Liu, Ping Yang, Junping |
author_sort | Lu, Huangxin |
collection | PubMed |
description | BACKGROUND: Circular RNAs (circRNAs) is a newly discovered non-coding RNA that can be used as biomarkers in clinical blood samples. This study aims to screen differentially expressed circular RNAs in PBMCs of patients with rheumatoid arthritis (RA) to determine new biomarkers for the diagnosis of RA. METHODS: The differentially expressed circRNAs in peripheral blood mononuclear cells (PBMCs) of 4 RA patients and 4 healthy participants were screened and analyzed by gene microarray technology. We then validated some of the differentially expressed circRNAs in PBMCs of 20 RA patients, 10 systemic lupus erythematosus (SLE) patients and 20 healthy participants using reverse transcription-quantitative polymerase chain reaction amplification (RT-qPCR). Spearman correlation test was performed to analyze the correlation between differentially expressed circRNAs and clinical variables in RA patients. Receiver operating characteristic (ROC) curves were calculated to evaluate the diagnostic value of circRNAs. RESULTS: Differential analysis obtained 149 circRNAs with significant up-regulated expression and 250 circRNAs with significant down-regulated expression, which predicted the miRNA targets and binding sites. Compared with SLE and health control group, hsa_circ_101328 was found to be a common gene with differential expression of RA. Besides, correlation analysis revealed significant correlation between hsa_circ_101328 and positive CRP. ROC curve analysis showed that hsa_circ_101328 has the potential of RA diagnosis. CONCLUSION: We identified some dysregulated circRNAs in PBMCs from RA patients, and hsa_circ_101328 may be a novel and effective biomarker for early diagnosis of RA. |
format | Online Article Text |
id | pubmed-8981773 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-89817732022-04-06 Expression profile of circRNA in peripheral blood mononuclear cells of patients with rheumatoid arthritis Lu, Huangxin Yang, Yifan Kuang, Dong Liu, Ping Yang, Junping BMC Med Genomics Research BACKGROUND: Circular RNAs (circRNAs) is a newly discovered non-coding RNA that can be used as biomarkers in clinical blood samples. This study aims to screen differentially expressed circular RNAs in PBMCs of patients with rheumatoid arthritis (RA) to determine new biomarkers for the diagnosis of RA. METHODS: The differentially expressed circRNAs in peripheral blood mononuclear cells (PBMCs) of 4 RA patients and 4 healthy participants were screened and analyzed by gene microarray technology. We then validated some of the differentially expressed circRNAs in PBMCs of 20 RA patients, 10 systemic lupus erythematosus (SLE) patients and 20 healthy participants using reverse transcription-quantitative polymerase chain reaction amplification (RT-qPCR). Spearman correlation test was performed to analyze the correlation between differentially expressed circRNAs and clinical variables in RA patients. Receiver operating characteristic (ROC) curves were calculated to evaluate the diagnostic value of circRNAs. RESULTS: Differential analysis obtained 149 circRNAs with significant up-regulated expression and 250 circRNAs with significant down-regulated expression, which predicted the miRNA targets and binding sites. Compared with SLE and health control group, hsa_circ_101328 was found to be a common gene with differential expression of RA. Besides, correlation analysis revealed significant correlation between hsa_circ_101328 and positive CRP. ROC curve analysis showed that hsa_circ_101328 has the potential of RA diagnosis. CONCLUSION: We identified some dysregulated circRNAs in PBMCs from RA patients, and hsa_circ_101328 may be a novel and effective biomarker for early diagnosis of RA. BioMed Central 2022-04-04 /pmc/articles/PMC8981773/ /pubmed/35379246 http://dx.doi.org/10.1186/s12920-022-01225-9 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Lu, Huangxin Yang, Yifan Kuang, Dong Liu, Ping Yang, Junping Expression profile of circRNA in peripheral blood mononuclear cells of patients with rheumatoid arthritis |
title | Expression profile of circRNA in peripheral blood mononuclear cells of patients with rheumatoid arthritis |
title_full | Expression profile of circRNA in peripheral blood mononuclear cells of patients with rheumatoid arthritis |
title_fullStr | Expression profile of circRNA in peripheral blood mononuclear cells of patients with rheumatoid arthritis |
title_full_unstemmed | Expression profile of circRNA in peripheral blood mononuclear cells of patients with rheumatoid arthritis |
title_short | Expression profile of circRNA in peripheral blood mononuclear cells of patients with rheumatoid arthritis |
title_sort | expression profile of circrna in peripheral blood mononuclear cells of patients with rheumatoid arthritis |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8981773/ https://www.ncbi.nlm.nih.gov/pubmed/35379246 http://dx.doi.org/10.1186/s12920-022-01225-9 |
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