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author Davis, Paul
Zarowiecki, Magdalena
Arnaboldi, Valerio
Becerra, Andrés
Cain, Scott
Chan, Juancarlos
Chen, Wen J
Cho, Jaehyoung
da Veiga Beltrame, Eduardo
Diamantakis, Stavros
Gao, Sibyl
Grigoriadis, Dionysis
Grove, Christian A
Harris, Todd W
Kishore, Ranjana
Le, Tuan
Lee, Raymond Y N
Luypaert, Manuel
Müller, Hans-Michael
Nakamura, Cecilia
Nuin, Paulo
Paulini, Michael
Quinton-Tulloch, Mark
Raciti, Daniela
Rodgers, Faye H
Russell, Matthew
Schindelman, Gary
Singh, Archana
Stickland, Tim
Van Auken, Kimberly
Wang, Qinghua
Williams, Gary
Wright, Adam J
Yook, Karen
Berriman, Matt
Howe, Kevin L
Schedl, Tim
Stein, Lincoln
Sternberg, Paul W
author_facet Davis, Paul
Zarowiecki, Magdalena
Arnaboldi, Valerio
Becerra, Andrés
Cain, Scott
Chan, Juancarlos
Chen, Wen J
Cho, Jaehyoung
da Veiga Beltrame, Eduardo
Diamantakis, Stavros
Gao, Sibyl
Grigoriadis, Dionysis
Grove, Christian A
Harris, Todd W
Kishore, Ranjana
Le, Tuan
Lee, Raymond Y N
Luypaert, Manuel
Müller, Hans-Michael
Nakamura, Cecilia
Nuin, Paulo
Paulini, Michael
Quinton-Tulloch, Mark
Raciti, Daniela
Rodgers, Faye H
Russell, Matthew
Schindelman, Gary
Singh, Archana
Stickland, Tim
Van Auken, Kimberly
Wang, Qinghua
Williams, Gary
Wright, Adam J
Yook, Karen
Berriman, Matt
Howe, Kevin L
Schedl, Tim
Stein, Lincoln
Sternberg, Paul W
author_sort Davis, Paul
collection PubMed
description WormBase (www.wormbase.org) is the central repository for the genetics and genomics of the nematode Caenorhabditis elegans. We provide the research community with data and tools to facilitate the use of C. elegans and related nematodes as model organisms for studying human health, development, and many aspects of fundamental biology. Throughout our 22-year history, we have continued to evolve to reflect progress and innovation in the science and technologies involved in the study of C. elegans. We strive to incorporate new data types and richer data sets, and to provide integrated displays and services that avail the knowledge generated by the published nematode genetics literature. Here, we provide a broad overview of the current state of WormBase in terms of data type, curation workflows, analysis, and tools, including exciting new advances for analysis of single-cell data, text mining and visualization, and the new community collaboration forum. Concurrently, we continue the integration and harmonization of infrastructure, processes, and tools with the Alliance of Genome Resources, of which WormBase is a founding member.
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spelling pubmed-89820182022-04-05 WormBase in 2022—data, processes, and tools for analyzing Caenorhabditis elegans Davis, Paul Zarowiecki, Magdalena Arnaboldi, Valerio Becerra, Andrés Cain, Scott Chan, Juancarlos Chen, Wen J Cho, Jaehyoung da Veiga Beltrame, Eduardo Diamantakis, Stavros Gao, Sibyl Grigoriadis, Dionysis Grove, Christian A Harris, Todd W Kishore, Ranjana Le, Tuan Lee, Raymond Y N Luypaert, Manuel Müller, Hans-Michael Nakamura, Cecilia Nuin, Paulo Paulini, Michael Quinton-Tulloch, Mark Raciti, Daniela Rodgers, Faye H Russell, Matthew Schindelman, Gary Singh, Archana Stickland, Tim Van Auken, Kimberly Wang, Qinghua Williams, Gary Wright, Adam J Yook, Karen Berriman, Matt Howe, Kevin L Schedl, Tim Stein, Lincoln Sternberg, Paul W Genetics Knowledgebase and Database Resources WormBase (www.wormbase.org) is the central repository for the genetics and genomics of the nematode Caenorhabditis elegans. We provide the research community with data and tools to facilitate the use of C. elegans and related nematodes as model organisms for studying human health, development, and many aspects of fundamental biology. Throughout our 22-year history, we have continued to evolve to reflect progress and innovation in the science and technologies involved in the study of C. elegans. We strive to incorporate new data types and richer data sets, and to provide integrated displays and services that avail the knowledge generated by the published nematode genetics literature. Here, we provide a broad overview of the current state of WormBase in terms of data type, curation workflows, analysis, and tools, including exciting new advances for analysis of single-cell data, text mining and visualization, and the new community collaboration forum. Concurrently, we continue the integration and harmonization of infrastructure, processes, and tools with the Alliance of Genome Resources, of which WormBase is a founding member. Oxford University Press 2022-02-04 /pmc/articles/PMC8982018/ /pubmed/35134929 http://dx.doi.org/10.1093/genetics/iyac003 Text en © The Author(s) 2022. Published by Oxford University Press on behalf of Genetics Society of America. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Knowledgebase and Database Resources
Davis, Paul
Zarowiecki, Magdalena
Arnaboldi, Valerio
Becerra, Andrés
Cain, Scott
Chan, Juancarlos
Chen, Wen J
Cho, Jaehyoung
da Veiga Beltrame, Eduardo
Diamantakis, Stavros
Gao, Sibyl
Grigoriadis, Dionysis
Grove, Christian A
Harris, Todd W
Kishore, Ranjana
Le, Tuan
Lee, Raymond Y N
Luypaert, Manuel
Müller, Hans-Michael
Nakamura, Cecilia
Nuin, Paulo
Paulini, Michael
Quinton-Tulloch, Mark
Raciti, Daniela
Rodgers, Faye H
Russell, Matthew
Schindelman, Gary
Singh, Archana
Stickland, Tim
Van Auken, Kimberly
Wang, Qinghua
Williams, Gary
Wright, Adam J
Yook, Karen
Berriman, Matt
Howe, Kevin L
Schedl, Tim
Stein, Lincoln
Sternberg, Paul W
WormBase in 2022—data, processes, and tools for analyzing Caenorhabditis elegans
title WormBase in 2022—data, processes, and tools for analyzing Caenorhabditis elegans
title_full WormBase in 2022—data, processes, and tools for analyzing Caenorhabditis elegans
title_fullStr WormBase in 2022—data, processes, and tools for analyzing Caenorhabditis elegans
title_full_unstemmed WormBase in 2022—data, processes, and tools for analyzing Caenorhabditis elegans
title_short WormBase in 2022—data, processes, and tools for analyzing Caenorhabditis elegans
title_sort wormbase in 2022—data, processes, and tools for analyzing caenorhabditis elegans
topic Knowledgebase and Database Resources
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8982018/
https://www.ncbi.nlm.nih.gov/pubmed/35134929
http://dx.doi.org/10.1093/genetics/iyac003
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