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WormBase in 2022—data, processes, and tools for analyzing Caenorhabditis elegans
WormBase (www.wormbase.org) is the central repository for the genetics and genomics of the nematode Caenorhabditis elegans. We provide the research community with data and tools to facilitate the use of C. elegans and related nematodes as model organisms for studying human health, development, and m...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8982018/ https://www.ncbi.nlm.nih.gov/pubmed/35134929 http://dx.doi.org/10.1093/genetics/iyac003 |
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author | Davis, Paul Zarowiecki, Magdalena Arnaboldi, Valerio Becerra, Andrés Cain, Scott Chan, Juancarlos Chen, Wen J Cho, Jaehyoung da Veiga Beltrame, Eduardo Diamantakis, Stavros Gao, Sibyl Grigoriadis, Dionysis Grove, Christian A Harris, Todd W Kishore, Ranjana Le, Tuan Lee, Raymond Y N Luypaert, Manuel Müller, Hans-Michael Nakamura, Cecilia Nuin, Paulo Paulini, Michael Quinton-Tulloch, Mark Raciti, Daniela Rodgers, Faye H Russell, Matthew Schindelman, Gary Singh, Archana Stickland, Tim Van Auken, Kimberly Wang, Qinghua Williams, Gary Wright, Adam J Yook, Karen Berriman, Matt Howe, Kevin L Schedl, Tim Stein, Lincoln Sternberg, Paul W |
author_facet | Davis, Paul Zarowiecki, Magdalena Arnaboldi, Valerio Becerra, Andrés Cain, Scott Chan, Juancarlos Chen, Wen J Cho, Jaehyoung da Veiga Beltrame, Eduardo Diamantakis, Stavros Gao, Sibyl Grigoriadis, Dionysis Grove, Christian A Harris, Todd W Kishore, Ranjana Le, Tuan Lee, Raymond Y N Luypaert, Manuel Müller, Hans-Michael Nakamura, Cecilia Nuin, Paulo Paulini, Michael Quinton-Tulloch, Mark Raciti, Daniela Rodgers, Faye H Russell, Matthew Schindelman, Gary Singh, Archana Stickland, Tim Van Auken, Kimberly Wang, Qinghua Williams, Gary Wright, Adam J Yook, Karen Berriman, Matt Howe, Kevin L Schedl, Tim Stein, Lincoln Sternberg, Paul W |
author_sort | Davis, Paul |
collection | PubMed |
description | WormBase (www.wormbase.org) is the central repository for the genetics and genomics of the nematode Caenorhabditis elegans. We provide the research community with data and tools to facilitate the use of C. elegans and related nematodes as model organisms for studying human health, development, and many aspects of fundamental biology. Throughout our 22-year history, we have continued to evolve to reflect progress and innovation in the science and technologies involved in the study of C. elegans. We strive to incorporate new data types and richer data sets, and to provide integrated displays and services that avail the knowledge generated by the published nematode genetics literature. Here, we provide a broad overview of the current state of WormBase in terms of data type, curation workflows, analysis, and tools, including exciting new advances for analysis of single-cell data, text mining and visualization, and the new community collaboration forum. Concurrently, we continue the integration and harmonization of infrastructure, processes, and tools with the Alliance of Genome Resources, of which WormBase is a founding member. |
format | Online Article Text |
id | pubmed-8982018 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-89820182022-04-05 WormBase in 2022—data, processes, and tools for analyzing Caenorhabditis elegans Davis, Paul Zarowiecki, Magdalena Arnaboldi, Valerio Becerra, Andrés Cain, Scott Chan, Juancarlos Chen, Wen J Cho, Jaehyoung da Veiga Beltrame, Eduardo Diamantakis, Stavros Gao, Sibyl Grigoriadis, Dionysis Grove, Christian A Harris, Todd W Kishore, Ranjana Le, Tuan Lee, Raymond Y N Luypaert, Manuel Müller, Hans-Michael Nakamura, Cecilia Nuin, Paulo Paulini, Michael Quinton-Tulloch, Mark Raciti, Daniela Rodgers, Faye H Russell, Matthew Schindelman, Gary Singh, Archana Stickland, Tim Van Auken, Kimberly Wang, Qinghua Williams, Gary Wright, Adam J Yook, Karen Berriman, Matt Howe, Kevin L Schedl, Tim Stein, Lincoln Sternberg, Paul W Genetics Knowledgebase and Database Resources WormBase (www.wormbase.org) is the central repository for the genetics and genomics of the nematode Caenorhabditis elegans. We provide the research community with data and tools to facilitate the use of C. elegans and related nematodes as model organisms for studying human health, development, and many aspects of fundamental biology. Throughout our 22-year history, we have continued to evolve to reflect progress and innovation in the science and technologies involved in the study of C. elegans. We strive to incorporate new data types and richer data sets, and to provide integrated displays and services that avail the knowledge generated by the published nematode genetics literature. Here, we provide a broad overview of the current state of WormBase in terms of data type, curation workflows, analysis, and tools, including exciting new advances for analysis of single-cell data, text mining and visualization, and the new community collaboration forum. Concurrently, we continue the integration and harmonization of infrastructure, processes, and tools with the Alliance of Genome Resources, of which WormBase is a founding member. Oxford University Press 2022-02-04 /pmc/articles/PMC8982018/ /pubmed/35134929 http://dx.doi.org/10.1093/genetics/iyac003 Text en © The Author(s) 2022. Published by Oxford University Press on behalf of Genetics Society of America. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Knowledgebase and Database Resources Davis, Paul Zarowiecki, Magdalena Arnaboldi, Valerio Becerra, Andrés Cain, Scott Chan, Juancarlos Chen, Wen J Cho, Jaehyoung da Veiga Beltrame, Eduardo Diamantakis, Stavros Gao, Sibyl Grigoriadis, Dionysis Grove, Christian A Harris, Todd W Kishore, Ranjana Le, Tuan Lee, Raymond Y N Luypaert, Manuel Müller, Hans-Michael Nakamura, Cecilia Nuin, Paulo Paulini, Michael Quinton-Tulloch, Mark Raciti, Daniela Rodgers, Faye H Russell, Matthew Schindelman, Gary Singh, Archana Stickland, Tim Van Auken, Kimberly Wang, Qinghua Williams, Gary Wright, Adam J Yook, Karen Berriman, Matt Howe, Kevin L Schedl, Tim Stein, Lincoln Sternberg, Paul W WormBase in 2022—data, processes, and tools for analyzing Caenorhabditis elegans |
title | WormBase in 2022—data, processes, and tools for analyzing Caenorhabditis elegans |
title_full | WormBase in 2022—data, processes, and tools for analyzing Caenorhabditis elegans |
title_fullStr | WormBase in 2022—data, processes, and tools for analyzing Caenorhabditis elegans |
title_full_unstemmed | WormBase in 2022—data, processes, and tools for analyzing Caenorhabditis elegans |
title_short | WormBase in 2022—data, processes, and tools for analyzing Caenorhabditis elegans |
title_sort | wormbase in 2022—data, processes, and tools for analyzing caenorhabditis elegans |
topic | Knowledgebase and Database Resources |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8982018/ https://www.ncbi.nlm.nih.gov/pubmed/35134929 http://dx.doi.org/10.1093/genetics/iyac003 |
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