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EyeHealer: A large-scale anterior eye segment dataset with eye structure and lesion annotations

Anterior segment eye diseases account for a significant proportion of presentations to eye clinics worldwide, including diseases associated with corneal pathologies, anterior chamber abnormalities (e.g. blood or inflammation), and lens diseases. The construction of an automatic tool for segmentation...

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Autores principales: Cai, Wenjia, Xu, Jie, Wang, Ke, Liu, Xiaohong, Xu, Wenqin, Cai, Huimin, Gao, Yuanxu, Su, Yuandong, Zhang, Meixia, Zhu, Jie, Zhang, Charlotte L, Zhang, Edward E, Wang, Fangfei, Yin, Yun, Lai, Iat Fan, Wang, Guangyu, Zhang, Kang, Zheng, Yingfeng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8982547/
https://www.ncbi.nlm.nih.gov/pubmed/35694155
http://dx.doi.org/10.1093/pcmedi/pbab009
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author Cai, Wenjia
Xu, Jie
Wang, Ke
Liu, Xiaohong
Xu, Wenqin
Cai, Huimin
Gao, Yuanxu
Su, Yuandong
Zhang, Meixia
Zhu, Jie
Zhang, Charlotte L
Zhang, Edward E
Wang, Fangfei
Yin, Yun
Lai, Iat Fan
Wang, Guangyu
Zhang, Kang
Zheng, Yingfeng
author_facet Cai, Wenjia
Xu, Jie
Wang, Ke
Liu, Xiaohong
Xu, Wenqin
Cai, Huimin
Gao, Yuanxu
Su, Yuandong
Zhang, Meixia
Zhu, Jie
Zhang, Charlotte L
Zhang, Edward E
Wang, Fangfei
Yin, Yun
Lai, Iat Fan
Wang, Guangyu
Zhang, Kang
Zheng, Yingfeng
author_sort Cai, Wenjia
collection PubMed
description Anterior segment eye diseases account for a significant proportion of presentations to eye clinics worldwide, including diseases associated with corneal pathologies, anterior chamber abnormalities (e.g. blood or inflammation), and lens diseases. The construction of an automatic tool for segmentation of anterior segment eye lesions would greatly improve the efficiency of clinical care. With research on artificial intelligence progressing in recent years, deep learning models have shown their superiority in image classification and segmentation. The training and evaluation of deep learning models should be based on a large amount of data annotated with expertise; however, such data are relatively scarce in the domain of medicine. Herein, the authors developed a new medical image annotation system, called EyeHealer. It is a large-scale anterior eye segment dataset with both eye structures and lesions annotated at the pixel level. Comprehensive experiments were conducted to verify its performance in disease classification and eye lesion segmentation. The results showed that semantic segmentation models outperformed medical segmentation models. This paper describes the establishment of the system for automated classification and segmentation tasks. The dataset will be made publicly available to encourage future research in this area.
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spelling pubmed-89825472022-06-10 EyeHealer: A large-scale anterior eye segment dataset with eye structure and lesion annotations Cai, Wenjia Xu, Jie Wang, Ke Liu, Xiaohong Xu, Wenqin Cai, Huimin Gao, Yuanxu Su, Yuandong Zhang, Meixia Zhu, Jie Zhang, Charlotte L Zhang, Edward E Wang, Fangfei Yin, Yun Lai, Iat Fan Wang, Guangyu Zhang, Kang Zheng, Yingfeng Precis Clin Med Research Article Anterior segment eye diseases account for a significant proportion of presentations to eye clinics worldwide, including diseases associated with corneal pathologies, anterior chamber abnormalities (e.g. blood or inflammation), and lens diseases. The construction of an automatic tool for segmentation of anterior segment eye lesions would greatly improve the efficiency of clinical care. With research on artificial intelligence progressing in recent years, deep learning models have shown their superiority in image classification and segmentation. The training and evaluation of deep learning models should be based on a large amount of data annotated with expertise; however, such data are relatively scarce in the domain of medicine. Herein, the authors developed a new medical image annotation system, called EyeHealer. It is a large-scale anterior eye segment dataset with both eye structures and lesions annotated at the pixel level. Comprehensive experiments were conducted to verify its performance in disease classification and eye lesion segmentation. The results showed that semantic segmentation models outperformed medical segmentation models. This paper describes the establishment of the system for automated classification and segmentation tasks. The dataset will be made publicly available to encourage future research in this area. Oxford University Press 2021-04-27 /pmc/articles/PMC8982547/ /pubmed/35694155 http://dx.doi.org/10.1093/pcmedi/pbab009 Text en © The Author(s) 2021. Published by Oxford University Press on behalf of the West China School of Medicine & West China Hospital of Sichuan University. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) ), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Research Article
Cai, Wenjia
Xu, Jie
Wang, Ke
Liu, Xiaohong
Xu, Wenqin
Cai, Huimin
Gao, Yuanxu
Su, Yuandong
Zhang, Meixia
Zhu, Jie
Zhang, Charlotte L
Zhang, Edward E
Wang, Fangfei
Yin, Yun
Lai, Iat Fan
Wang, Guangyu
Zhang, Kang
Zheng, Yingfeng
EyeHealer: A large-scale anterior eye segment dataset with eye structure and lesion annotations
title EyeHealer: A large-scale anterior eye segment dataset with eye structure and lesion annotations
title_full EyeHealer: A large-scale anterior eye segment dataset with eye structure and lesion annotations
title_fullStr EyeHealer: A large-scale anterior eye segment dataset with eye structure and lesion annotations
title_full_unstemmed EyeHealer: A large-scale anterior eye segment dataset with eye structure and lesion annotations
title_short EyeHealer: A large-scale anterior eye segment dataset with eye structure and lesion annotations
title_sort eyehealer: a large-scale anterior eye segment dataset with eye structure and lesion annotations
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8982547/
https://www.ncbi.nlm.nih.gov/pubmed/35694155
http://dx.doi.org/10.1093/pcmedi/pbab009
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