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EyeHealer: A large-scale anterior eye segment dataset with eye structure and lesion annotations
Anterior segment eye diseases account for a significant proportion of presentations to eye clinics worldwide, including diseases associated with corneal pathologies, anterior chamber abnormalities (e.g. blood or inflammation), and lens diseases. The construction of an automatic tool for segmentation...
Autores principales: | , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8982547/ https://www.ncbi.nlm.nih.gov/pubmed/35694155 http://dx.doi.org/10.1093/pcmedi/pbab009 |
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author | Cai, Wenjia Xu, Jie Wang, Ke Liu, Xiaohong Xu, Wenqin Cai, Huimin Gao, Yuanxu Su, Yuandong Zhang, Meixia Zhu, Jie Zhang, Charlotte L Zhang, Edward E Wang, Fangfei Yin, Yun Lai, Iat Fan Wang, Guangyu Zhang, Kang Zheng, Yingfeng |
author_facet | Cai, Wenjia Xu, Jie Wang, Ke Liu, Xiaohong Xu, Wenqin Cai, Huimin Gao, Yuanxu Su, Yuandong Zhang, Meixia Zhu, Jie Zhang, Charlotte L Zhang, Edward E Wang, Fangfei Yin, Yun Lai, Iat Fan Wang, Guangyu Zhang, Kang Zheng, Yingfeng |
author_sort | Cai, Wenjia |
collection | PubMed |
description | Anterior segment eye diseases account for a significant proportion of presentations to eye clinics worldwide, including diseases associated with corneal pathologies, anterior chamber abnormalities (e.g. blood or inflammation), and lens diseases. The construction of an automatic tool for segmentation of anterior segment eye lesions would greatly improve the efficiency of clinical care. With research on artificial intelligence progressing in recent years, deep learning models have shown their superiority in image classification and segmentation. The training and evaluation of deep learning models should be based on a large amount of data annotated with expertise; however, such data are relatively scarce in the domain of medicine. Herein, the authors developed a new medical image annotation system, called EyeHealer. It is a large-scale anterior eye segment dataset with both eye structures and lesions annotated at the pixel level. Comprehensive experiments were conducted to verify its performance in disease classification and eye lesion segmentation. The results showed that semantic segmentation models outperformed medical segmentation models. This paper describes the establishment of the system for automated classification and segmentation tasks. The dataset will be made publicly available to encourage future research in this area. |
format | Online Article Text |
id | pubmed-8982547 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-89825472022-06-10 EyeHealer: A large-scale anterior eye segment dataset with eye structure and lesion annotations Cai, Wenjia Xu, Jie Wang, Ke Liu, Xiaohong Xu, Wenqin Cai, Huimin Gao, Yuanxu Su, Yuandong Zhang, Meixia Zhu, Jie Zhang, Charlotte L Zhang, Edward E Wang, Fangfei Yin, Yun Lai, Iat Fan Wang, Guangyu Zhang, Kang Zheng, Yingfeng Precis Clin Med Research Article Anterior segment eye diseases account for a significant proportion of presentations to eye clinics worldwide, including diseases associated with corneal pathologies, anterior chamber abnormalities (e.g. blood or inflammation), and lens diseases. The construction of an automatic tool for segmentation of anterior segment eye lesions would greatly improve the efficiency of clinical care. With research on artificial intelligence progressing in recent years, deep learning models have shown their superiority in image classification and segmentation. The training and evaluation of deep learning models should be based on a large amount of data annotated with expertise; however, such data are relatively scarce in the domain of medicine. Herein, the authors developed a new medical image annotation system, called EyeHealer. It is a large-scale anterior eye segment dataset with both eye structures and lesions annotated at the pixel level. Comprehensive experiments were conducted to verify its performance in disease classification and eye lesion segmentation. The results showed that semantic segmentation models outperformed medical segmentation models. This paper describes the establishment of the system for automated classification and segmentation tasks. The dataset will be made publicly available to encourage future research in this area. Oxford University Press 2021-04-27 /pmc/articles/PMC8982547/ /pubmed/35694155 http://dx.doi.org/10.1093/pcmedi/pbab009 Text en © The Author(s) 2021. Published by Oxford University Press on behalf of the West China School of Medicine & West China Hospital of Sichuan University. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) ), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Research Article Cai, Wenjia Xu, Jie Wang, Ke Liu, Xiaohong Xu, Wenqin Cai, Huimin Gao, Yuanxu Su, Yuandong Zhang, Meixia Zhu, Jie Zhang, Charlotte L Zhang, Edward E Wang, Fangfei Yin, Yun Lai, Iat Fan Wang, Guangyu Zhang, Kang Zheng, Yingfeng EyeHealer: A large-scale anterior eye segment dataset with eye structure and lesion annotations |
title | EyeHealer: A large-scale anterior eye segment dataset with eye structure and lesion annotations |
title_full | EyeHealer: A large-scale anterior eye segment dataset with eye structure and lesion annotations |
title_fullStr | EyeHealer: A large-scale anterior eye segment dataset with eye structure and lesion annotations |
title_full_unstemmed | EyeHealer: A large-scale anterior eye segment dataset with eye structure and lesion annotations |
title_short | EyeHealer: A large-scale anterior eye segment dataset with eye structure and lesion annotations |
title_sort | eyehealer: a large-scale anterior eye segment dataset with eye structure and lesion annotations |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8982547/ https://www.ncbi.nlm.nih.gov/pubmed/35694155 http://dx.doi.org/10.1093/pcmedi/pbab009 |
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