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Teacher-student approach for lung tumor segmentation from mixed-supervised datasets

PURPOSE: Cancer is among the leading causes of death in the developed world, and lung cancer is the most lethal type. Early detection is crucial for better prognosis, but can be resource intensive to achieve. Automating tasks such as lung tumor localization and segmentation in radiological images ca...

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Autores principales: Fredriksen, Vemund, Sevle, Svein Ole M., Pedersen, André, Langø, Thomas, Kiss, Gabriel, Lindseth, Frank
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8982833/
https://www.ncbi.nlm.nih.gov/pubmed/35381046
http://dx.doi.org/10.1371/journal.pone.0266147
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author Fredriksen, Vemund
Sevle, Svein Ole M.
Pedersen, André
Langø, Thomas
Kiss, Gabriel
Lindseth, Frank
author_facet Fredriksen, Vemund
Sevle, Svein Ole M.
Pedersen, André
Langø, Thomas
Kiss, Gabriel
Lindseth, Frank
author_sort Fredriksen, Vemund
collection PubMed
description PURPOSE: Cancer is among the leading causes of death in the developed world, and lung cancer is the most lethal type. Early detection is crucial for better prognosis, but can be resource intensive to achieve. Automating tasks such as lung tumor localization and segmentation in radiological images can free valuable time for radiologists and other clinical personnel. Convolutional neural networks may be suited for such tasks, but require substantial amounts of labeled data to train. Obtaining labeled data is a challenge, especially in the medical domain. METHODS: This paper investigates the use of a teacher-student design to utilize datasets with different types of supervision to train an automatic model performing pulmonary tumor segmentation on computed tomography images. The framework consists of two models: the student that performs end-to-end automatic tumor segmentation and the teacher that supplies the student additional pseudo-annotated data during training. RESULTS: Using only a small proportion of semantically labeled data and a large number of bounding box annotated data, we achieved competitive performance using a teacher-student design. Models trained on larger amounts of semantic annotations did not perform better than those trained on teacher-annotated data. Our model trained on a small number of semantically labeled data achieved a mean dice similarity coefficient of 71.0 on the MSD Lung dataset. CONCLUSIONS: Our results demonstrate the potential of utilizing teacher-student designs to reduce the annotation load, as less supervised annotation schemes may be performed, without any real degradation in segmentation accuracy.
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spelling pubmed-89828332022-04-06 Teacher-student approach for lung tumor segmentation from mixed-supervised datasets Fredriksen, Vemund Sevle, Svein Ole M. Pedersen, André Langø, Thomas Kiss, Gabriel Lindseth, Frank PLoS One Research Article PURPOSE: Cancer is among the leading causes of death in the developed world, and lung cancer is the most lethal type. Early detection is crucial for better prognosis, but can be resource intensive to achieve. Automating tasks such as lung tumor localization and segmentation in radiological images can free valuable time for radiologists and other clinical personnel. Convolutional neural networks may be suited for such tasks, but require substantial amounts of labeled data to train. Obtaining labeled data is a challenge, especially in the medical domain. METHODS: This paper investigates the use of a teacher-student design to utilize datasets with different types of supervision to train an automatic model performing pulmonary tumor segmentation on computed tomography images. The framework consists of two models: the student that performs end-to-end automatic tumor segmentation and the teacher that supplies the student additional pseudo-annotated data during training. RESULTS: Using only a small proportion of semantically labeled data and a large number of bounding box annotated data, we achieved competitive performance using a teacher-student design. Models trained on larger amounts of semantic annotations did not perform better than those trained on teacher-annotated data. Our model trained on a small number of semantically labeled data achieved a mean dice similarity coefficient of 71.0 on the MSD Lung dataset. CONCLUSIONS: Our results demonstrate the potential of utilizing teacher-student designs to reduce the annotation load, as less supervised annotation schemes may be performed, without any real degradation in segmentation accuracy. Public Library of Science 2022-04-05 /pmc/articles/PMC8982833/ /pubmed/35381046 http://dx.doi.org/10.1371/journal.pone.0266147 Text en © 2022 Fredriksen et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Fredriksen, Vemund
Sevle, Svein Ole M.
Pedersen, André
Langø, Thomas
Kiss, Gabriel
Lindseth, Frank
Teacher-student approach for lung tumor segmentation from mixed-supervised datasets
title Teacher-student approach for lung tumor segmentation from mixed-supervised datasets
title_full Teacher-student approach for lung tumor segmentation from mixed-supervised datasets
title_fullStr Teacher-student approach for lung tumor segmentation from mixed-supervised datasets
title_full_unstemmed Teacher-student approach for lung tumor segmentation from mixed-supervised datasets
title_short Teacher-student approach for lung tumor segmentation from mixed-supervised datasets
title_sort teacher-student approach for lung tumor segmentation from mixed-supervised datasets
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8982833/
https://www.ncbi.nlm.nih.gov/pubmed/35381046
http://dx.doi.org/10.1371/journal.pone.0266147
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