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Development of Tumor Mutation Burden-Related Prognostic Model and Novel Biomarker Identification in Stomach Adenocarcinoma

Background: Stomach adenocarcinoma (STAD) is one of the most common tumors. Tumor mutation burden (TMB) has been linked to immunotherapy response. We wanted to see if there was any link between TMB and cancer prognosis. Methods: The Cancer Genome Atlas (TCGA) and the Gene Expression Omnibus (GEO) da...

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Autores principales: Fu, Min, Huang, Yongbiao, Peng, Xiaohong, Li, Xiaoyu, Luo, Na, Zhu, Wenjun, Yang, Feng, Chen, Ziqi, Ma, Shengling, Zhang, Yuanyuan, Li, Qianxia, Hu, Guangyuan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8983817/
https://www.ncbi.nlm.nih.gov/pubmed/35399509
http://dx.doi.org/10.3389/fcell.2022.790920
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author Fu, Min
Huang, Yongbiao
Peng, Xiaohong
Li, Xiaoyu
Luo, Na
Zhu, Wenjun
Yang, Feng
Chen, Ziqi
Ma, Shengling
Zhang, Yuanyuan
Li, Qianxia
Hu, Guangyuan
author_facet Fu, Min
Huang, Yongbiao
Peng, Xiaohong
Li, Xiaoyu
Luo, Na
Zhu, Wenjun
Yang, Feng
Chen, Ziqi
Ma, Shengling
Zhang, Yuanyuan
Li, Qianxia
Hu, Guangyuan
author_sort Fu, Min
collection PubMed
description Background: Stomach adenocarcinoma (STAD) is one of the most common tumors. Tumor mutation burden (TMB) has been linked to immunotherapy response. We wanted to see if there was any link between TMB and cancer prognosis. Methods: The Cancer Genome Atlas (TCGA) and the Gene Expression Omnibus (GEO) databases were used to obtain mutation data, gene expression profiles, and clinical data. We looked at the differences in gene expression and immune markers between low and high TMB groups, built an immune prognostic model, and created a dynamic nomograph App that may be used in the clinic. Simultaneously, We ran the immunotherapy prediction and model comparison at the same time. Finally, model gene mutation and copy number variation (CNV) were displayed. The cellular functional experiments were used to investigate the potential role of GLP2R in gastric cancer. Results: Firstly, basic mutation information and differences in immune infiltration in STAD are revealed. Secondly, the prognostic model developed by us has good accuracy, and the corresponding dynamic nomograph Apps online and immunotherapy prediction facilitate clinical transformation. Furthermore, GLP2R knockdown significantly inhibited the proliferation, migration of gastric cancer cells in vitro. Conclusion: Our findings imply that TMB plays a significant role in the prognosis of STAD patients from a biological perspective. GLP2R may serve as a potential target for gastric cancer.
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spelling pubmed-89838172022-04-07 Development of Tumor Mutation Burden-Related Prognostic Model and Novel Biomarker Identification in Stomach Adenocarcinoma Fu, Min Huang, Yongbiao Peng, Xiaohong Li, Xiaoyu Luo, Na Zhu, Wenjun Yang, Feng Chen, Ziqi Ma, Shengling Zhang, Yuanyuan Li, Qianxia Hu, Guangyuan Front Cell Dev Biol Cell and Developmental Biology Background: Stomach adenocarcinoma (STAD) is one of the most common tumors. Tumor mutation burden (TMB) has been linked to immunotherapy response. We wanted to see if there was any link between TMB and cancer prognosis. Methods: The Cancer Genome Atlas (TCGA) and the Gene Expression Omnibus (GEO) databases were used to obtain mutation data, gene expression profiles, and clinical data. We looked at the differences in gene expression and immune markers between low and high TMB groups, built an immune prognostic model, and created a dynamic nomograph App that may be used in the clinic. Simultaneously, We ran the immunotherapy prediction and model comparison at the same time. Finally, model gene mutation and copy number variation (CNV) were displayed. The cellular functional experiments were used to investigate the potential role of GLP2R in gastric cancer. Results: Firstly, basic mutation information and differences in immune infiltration in STAD are revealed. Secondly, the prognostic model developed by us has good accuracy, and the corresponding dynamic nomograph Apps online and immunotherapy prediction facilitate clinical transformation. Furthermore, GLP2R knockdown significantly inhibited the proliferation, migration of gastric cancer cells in vitro. Conclusion: Our findings imply that TMB plays a significant role in the prognosis of STAD patients from a biological perspective. GLP2R may serve as a potential target for gastric cancer. Frontiers Media S.A. 2022-03-23 /pmc/articles/PMC8983817/ /pubmed/35399509 http://dx.doi.org/10.3389/fcell.2022.790920 Text en Copyright © 2022 Fu, Huang, Peng, Li, Luo, Zhu, Yang, Chen, Ma, Zhang, Li and Hu. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Cell and Developmental Biology
Fu, Min
Huang, Yongbiao
Peng, Xiaohong
Li, Xiaoyu
Luo, Na
Zhu, Wenjun
Yang, Feng
Chen, Ziqi
Ma, Shengling
Zhang, Yuanyuan
Li, Qianxia
Hu, Guangyuan
Development of Tumor Mutation Burden-Related Prognostic Model and Novel Biomarker Identification in Stomach Adenocarcinoma
title Development of Tumor Mutation Burden-Related Prognostic Model and Novel Biomarker Identification in Stomach Adenocarcinoma
title_full Development of Tumor Mutation Burden-Related Prognostic Model and Novel Biomarker Identification in Stomach Adenocarcinoma
title_fullStr Development of Tumor Mutation Burden-Related Prognostic Model and Novel Biomarker Identification in Stomach Adenocarcinoma
title_full_unstemmed Development of Tumor Mutation Burden-Related Prognostic Model and Novel Biomarker Identification in Stomach Adenocarcinoma
title_short Development of Tumor Mutation Burden-Related Prognostic Model and Novel Biomarker Identification in Stomach Adenocarcinoma
title_sort development of tumor mutation burden-related prognostic model and novel biomarker identification in stomach adenocarcinoma
topic Cell and Developmental Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8983817/
https://www.ncbi.nlm.nih.gov/pubmed/35399509
http://dx.doi.org/10.3389/fcell.2022.790920
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