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Uncovering Essential Tremor Genetics: The Promise of Long-Read Sequencing

Long-read sequencing (LRS) technologies have been recently introduced to overcome intrinsic limitations of widely-used next-generation sequencing (NGS) technologies, namely the sequencing limited to short-read fragments (150–300 base pairs). Since its introduction, LRS has permitted many successes i...

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Autores principales: Marsili, Luca, Duque, Kevin R., Bode, Rachel L., Kauffman, Marcelo A., Espay, Alberto J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8983820/
https://www.ncbi.nlm.nih.gov/pubmed/35401394
http://dx.doi.org/10.3389/fneur.2022.821189
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author Marsili, Luca
Duque, Kevin R.
Bode, Rachel L.
Kauffman, Marcelo A.
Espay, Alberto J.
author_facet Marsili, Luca
Duque, Kevin R.
Bode, Rachel L.
Kauffman, Marcelo A.
Espay, Alberto J.
author_sort Marsili, Luca
collection PubMed
description Long-read sequencing (LRS) technologies have been recently introduced to overcome intrinsic limitations of widely-used next-generation sequencing (NGS) technologies, namely the sequencing limited to short-read fragments (150–300 base pairs). Since its introduction, LRS has permitted many successes in unraveling hidden mutational mechanisms. One area in clinical neurology in need of rethinking as it applies to genetic mechanisms is essential tremor (ET). This disorder, among the most common in neurology, is a syndrome often exhibiting an autosomal dominant pattern of inheritance whose large phenotypic spectrum suggest a multitude of genetic etiologies. Exome sequencing has revealed the genetic etiology only in rare ET families (FUS, SORT1, SCN4A, NOS3, KCNS2, HAPLN4/BRAL2, and USP46). We hypothesize that a reason for this shortcoming may be non-classical genetic mechanism(s) underpinning ET, among them trinucleotide, tetranucleotide, or pentanucleotide repeat disorders. In support of this hypothesis, trinucleotide (e.g., GGC repeats in NOTCH2NLC) and pentanucleotide repeat disorders (e.g., ATTTC repeats in STARD7) have been revealed as pathogenic in patients with a past history of what has come to be referred to as “ET plus,” bilateral hand tremor associated with epilepsy and/or leukoencephalopathy. A systematic review of LRS in neurodegenerative disorders showed that 10 of the 22 (45%) genetic etiologies ascertained by LRS include tremor in their phenotypic spectrum, suggesting that future clinical applications of LRS for tremor disorders may uncover genetic subtypes of familial ET that have eluded NGS, particularly those with associated leukoencephalopathy or family history of epilepsy. LRS provides a pathway for potentially uncovering novel genes and genetic mechanisms, helping narrow the large proportion of “idiopathic” ET.
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spelling pubmed-89838202022-04-07 Uncovering Essential Tremor Genetics: The Promise of Long-Read Sequencing Marsili, Luca Duque, Kevin R. Bode, Rachel L. Kauffman, Marcelo A. Espay, Alberto J. Front Neurol Neurology Long-read sequencing (LRS) technologies have been recently introduced to overcome intrinsic limitations of widely-used next-generation sequencing (NGS) technologies, namely the sequencing limited to short-read fragments (150–300 base pairs). Since its introduction, LRS has permitted many successes in unraveling hidden mutational mechanisms. One area in clinical neurology in need of rethinking as it applies to genetic mechanisms is essential tremor (ET). This disorder, among the most common in neurology, is a syndrome often exhibiting an autosomal dominant pattern of inheritance whose large phenotypic spectrum suggest a multitude of genetic etiologies. Exome sequencing has revealed the genetic etiology only in rare ET families (FUS, SORT1, SCN4A, NOS3, KCNS2, HAPLN4/BRAL2, and USP46). We hypothesize that a reason for this shortcoming may be non-classical genetic mechanism(s) underpinning ET, among them trinucleotide, tetranucleotide, or pentanucleotide repeat disorders. In support of this hypothesis, trinucleotide (e.g., GGC repeats in NOTCH2NLC) and pentanucleotide repeat disorders (e.g., ATTTC repeats in STARD7) have been revealed as pathogenic in patients with a past history of what has come to be referred to as “ET plus,” bilateral hand tremor associated with epilepsy and/or leukoencephalopathy. A systematic review of LRS in neurodegenerative disorders showed that 10 of the 22 (45%) genetic etiologies ascertained by LRS include tremor in their phenotypic spectrum, suggesting that future clinical applications of LRS for tremor disorders may uncover genetic subtypes of familial ET that have eluded NGS, particularly those with associated leukoencephalopathy or family history of epilepsy. LRS provides a pathway for potentially uncovering novel genes and genetic mechanisms, helping narrow the large proportion of “idiopathic” ET. Frontiers Media S.A. 2022-03-23 /pmc/articles/PMC8983820/ /pubmed/35401394 http://dx.doi.org/10.3389/fneur.2022.821189 Text en Copyright © 2022 Marsili, Duque, Bode, Kauffman and Espay. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Neurology
Marsili, Luca
Duque, Kevin R.
Bode, Rachel L.
Kauffman, Marcelo A.
Espay, Alberto J.
Uncovering Essential Tremor Genetics: The Promise of Long-Read Sequencing
title Uncovering Essential Tremor Genetics: The Promise of Long-Read Sequencing
title_full Uncovering Essential Tremor Genetics: The Promise of Long-Read Sequencing
title_fullStr Uncovering Essential Tremor Genetics: The Promise of Long-Read Sequencing
title_full_unstemmed Uncovering Essential Tremor Genetics: The Promise of Long-Read Sequencing
title_short Uncovering Essential Tremor Genetics: The Promise of Long-Read Sequencing
title_sort uncovering essential tremor genetics: the promise of long-read sequencing
topic Neurology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8983820/
https://www.ncbi.nlm.nih.gov/pubmed/35401394
http://dx.doi.org/10.3389/fneur.2022.821189
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