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Construction and Verification of a Glycolysis-Associated Gene Signature for the Prediction of Overall Survival in Low Grade Glioma

The overall survival of patients with lower grade glioma (LGG) that might develop into high-grade malignant glioma shows marked heterogeneity. The currently used clinical evaluation index is not sufficient to predict precise prognostic outcomes accurately. To optimize survival risk stratification an...

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Autores principales: Liu, Wei, Liu, Chunshan, Chen, Chengcong, Huang, Xiaoting, Yi, Qi, Tian, Yunhong, Peng, Biao, Yuan, Yawei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8983898/
https://www.ncbi.nlm.nih.gov/pubmed/35401698
http://dx.doi.org/10.3389/fgene.2022.843711
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author Liu, Wei
Liu, Chunshan
Chen, Chengcong
Huang, Xiaoting
Yi, Qi
Tian, Yunhong
Peng, Biao
Yuan, Yawei
author_facet Liu, Wei
Liu, Chunshan
Chen, Chengcong
Huang, Xiaoting
Yi, Qi
Tian, Yunhong
Peng, Biao
Yuan, Yawei
author_sort Liu, Wei
collection PubMed
description The overall survival of patients with lower grade glioma (LGG) that might develop into high-grade malignant glioma shows marked heterogeneity. The currently used clinical evaluation index is not sufficient to predict precise prognostic outcomes accurately. To optimize survival risk stratification and the personalized management of patients with LGG, there is an urgent need to develop an accurate risk prediction model. The TCGA-LGG dataset, downloaded from The Cancer Genome Atlas (TCGA) portal, was used as a training cohort, and the Chinese Glioma Genome Atlas (CGGA) dataset and Rembrandt dataset were used as validation cohorts. The levels of various cancer hallmarks were quantified, which identified glycolysis as the primary overall survival-related risk factor in LGGs. Furthermore, using various bioinformatic and statistical methods, we developed a strong glycolysis-related gene signature to predict prognosis. Gene set enrichment analysis showed that in our model, high-risk glioma correlated with the chemoradiotherapy resistance and poor survival. Moreover, based on established risk model and other clinical features, a decision tree and a nomogram were built, which could serve as useful tools in the diagnosis and treatment of LGGs. This study indicates that the glycolysis-related gene signature could distinguish high-risk and low‐risk patients precisely, and thus can be used as an independent clinical feature.
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spelling pubmed-89838982022-04-07 Construction and Verification of a Glycolysis-Associated Gene Signature for the Prediction of Overall Survival in Low Grade Glioma Liu, Wei Liu, Chunshan Chen, Chengcong Huang, Xiaoting Yi, Qi Tian, Yunhong Peng, Biao Yuan, Yawei Front Genet Genetics The overall survival of patients with lower grade glioma (LGG) that might develop into high-grade malignant glioma shows marked heterogeneity. The currently used clinical evaluation index is not sufficient to predict precise prognostic outcomes accurately. To optimize survival risk stratification and the personalized management of patients with LGG, there is an urgent need to develop an accurate risk prediction model. The TCGA-LGG dataset, downloaded from The Cancer Genome Atlas (TCGA) portal, was used as a training cohort, and the Chinese Glioma Genome Atlas (CGGA) dataset and Rembrandt dataset were used as validation cohorts. The levels of various cancer hallmarks were quantified, which identified glycolysis as the primary overall survival-related risk factor in LGGs. Furthermore, using various bioinformatic and statistical methods, we developed a strong glycolysis-related gene signature to predict prognosis. Gene set enrichment analysis showed that in our model, high-risk glioma correlated with the chemoradiotherapy resistance and poor survival. Moreover, based on established risk model and other clinical features, a decision tree and a nomogram were built, which could serve as useful tools in the diagnosis and treatment of LGGs. This study indicates that the glycolysis-related gene signature could distinguish high-risk and low‐risk patients precisely, and thus can be used as an independent clinical feature. Frontiers Media S.A. 2022-03-23 /pmc/articles/PMC8983898/ /pubmed/35401698 http://dx.doi.org/10.3389/fgene.2022.843711 Text en Copyright © 2022 Liu, Liu, Chen, Huang, Yi, Tian, Peng and Yuan. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
Liu, Wei
Liu, Chunshan
Chen, Chengcong
Huang, Xiaoting
Yi, Qi
Tian, Yunhong
Peng, Biao
Yuan, Yawei
Construction and Verification of a Glycolysis-Associated Gene Signature for the Prediction of Overall Survival in Low Grade Glioma
title Construction and Verification of a Glycolysis-Associated Gene Signature for the Prediction of Overall Survival in Low Grade Glioma
title_full Construction and Verification of a Glycolysis-Associated Gene Signature for the Prediction of Overall Survival in Low Grade Glioma
title_fullStr Construction and Verification of a Glycolysis-Associated Gene Signature for the Prediction of Overall Survival in Low Grade Glioma
title_full_unstemmed Construction and Verification of a Glycolysis-Associated Gene Signature for the Prediction of Overall Survival in Low Grade Glioma
title_short Construction and Verification of a Glycolysis-Associated Gene Signature for the Prediction of Overall Survival in Low Grade Glioma
title_sort construction and verification of a glycolysis-associated gene signature for the prediction of overall survival in low grade glioma
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8983898/
https://www.ncbi.nlm.nih.gov/pubmed/35401698
http://dx.doi.org/10.3389/fgene.2022.843711
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