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Empowering Data Sharing and Analytics through the Open Data Commons for Traumatic Brain Injury Research

Traumatic brain injury (TBI) is a major public health problem. Despite considerable research deciphering injury pathophysiology, precision therapies remain elusive. Here, we present large-scale data sharing and machine intelligence approaches to leverage TBI complexity. The Open Data Commons for TBI...

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Autores principales: Chou, Austin, Torres-Espín, Abel, Huie, J. Russell, Krukowski, Karen, Lee, Sangmi, Nolan, Amber, Guglielmetti, Caroline, Hawkins, Bridget E., Chaumeil, Myriam M., Manley, Geoffrey T., Beattie, Michael S., Bresnahan, Jacqueline C., Martone, Maryann E., Grethe, Jeffrey S., Rosi, Susanna, Ferguson, Adam R.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Mary Ann Liebert, Inc., publishers 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8985540/
https://www.ncbi.nlm.nih.gov/pubmed/35403104
http://dx.doi.org/10.1089/neur.2021.0061
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author Chou, Austin
Torres-Espín, Abel
Huie, J. Russell
Krukowski, Karen
Lee, Sangmi
Nolan, Amber
Guglielmetti, Caroline
Hawkins, Bridget E.
Chaumeil, Myriam M.
Manley, Geoffrey T.
Beattie, Michael S.
Bresnahan, Jacqueline C.
Martone, Maryann E.
Grethe, Jeffrey S.
Rosi, Susanna
Ferguson, Adam R.
author_facet Chou, Austin
Torres-Espín, Abel
Huie, J. Russell
Krukowski, Karen
Lee, Sangmi
Nolan, Amber
Guglielmetti, Caroline
Hawkins, Bridget E.
Chaumeil, Myriam M.
Manley, Geoffrey T.
Beattie, Michael S.
Bresnahan, Jacqueline C.
Martone, Maryann E.
Grethe, Jeffrey S.
Rosi, Susanna
Ferguson, Adam R.
author_sort Chou, Austin
collection PubMed
description Traumatic brain injury (TBI) is a major public health problem. Despite considerable research deciphering injury pathophysiology, precision therapies remain elusive. Here, we present large-scale data sharing and machine intelligence approaches to leverage TBI complexity. The Open Data Commons for TBI (ODC-TBI) is a community-centered repository emphasizing Findable, Accessible, Interoperable, and Reusable data sharing and publication with persistent identifiers. Importantly, the ODC-TBI implements data sharing of individual subject data, enabling pooling for high-sample-size, feature-rich data sets for machine learning analytics. We demonstrate pooled ODC-TBI data analyses, starting with descriptive analytics of subject-level data from 11 previously published articles (N = 1250 subjects) representing six distinct pre-clinical TBI models. Second, we perform unsupervised machine learning on multi-cohort data to identify persistent inflammatory patterns across different studies, improving experimental sensitivity for pro- versus anti-inflammation effects. As funders and journals increasingly mandate open data practices, ODC-TBI will create new scientific opportunities for researchers and facilitate multi-data-set, multi-dimensional analytics toward effective translation.
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spelling pubmed-89855402022-04-07 Empowering Data Sharing and Analytics through the Open Data Commons for Traumatic Brain Injury Research Chou, Austin Torres-Espín, Abel Huie, J. Russell Krukowski, Karen Lee, Sangmi Nolan, Amber Guglielmetti, Caroline Hawkins, Bridget E. Chaumeil, Myriam M. Manley, Geoffrey T. Beattie, Michael S. Bresnahan, Jacqueline C. Martone, Maryann E. Grethe, Jeffrey S. Rosi, Susanna Ferguson, Adam R. Neurotrauma Rep Original Article Traumatic brain injury (TBI) is a major public health problem. Despite considerable research deciphering injury pathophysiology, precision therapies remain elusive. Here, we present large-scale data sharing and machine intelligence approaches to leverage TBI complexity. The Open Data Commons for TBI (ODC-TBI) is a community-centered repository emphasizing Findable, Accessible, Interoperable, and Reusable data sharing and publication with persistent identifiers. Importantly, the ODC-TBI implements data sharing of individual subject data, enabling pooling for high-sample-size, feature-rich data sets for machine learning analytics. We demonstrate pooled ODC-TBI data analyses, starting with descriptive analytics of subject-level data from 11 previously published articles (N = 1250 subjects) representing six distinct pre-clinical TBI models. Second, we perform unsupervised machine learning on multi-cohort data to identify persistent inflammatory patterns across different studies, improving experimental sensitivity for pro- versus anti-inflammation effects. As funders and journals increasingly mandate open data practices, ODC-TBI will create new scientific opportunities for researchers and facilitate multi-data-set, multi-dimensional analytics toward effective translation. Mary Ann Liebert, Inc., publishers 2022-04-05 /pmc/articles/PMC8985540/ /pubmed/35403104 http://dx.doi.org/10.1089/neur.2021.0061 Text en © Austin Chou et al., 2022; Published by Mary Ann Liebert, Inc. https://creativecommons.org/licenses/by/4.0/This Open Access article is distributed under the terms of the Creative Commons License [CC-BY] (http://creativecommons.org/licenses/by/4.0 (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Article
Chou, Austin
Torres-Espín, Abel
Huie, J. Russell
Krukowski, Karen
Lee, Sangmi
Nolan, Amber
Guglielmetti, Caroline
Hawkins, Bridget E.
Chaumeil, Myriam M.
Manley, Geoffrey T.
Beattie, Michael S.
Bresnahan, Jacqueline C.
Martone, Maryann E.
Grethe, Jeffrey S.
Rosi, Susanna
Ferguson, Adam R.
Empowering Data Sharing and Analytics through the Open Data Commons for Traumatic Brain Injury Research
title Empowering Data Sharing and Analytics through the Open Data Commons for Traumatic Brain Injury Research
title_full Empowering Data Sharing and Analytics through the Open Data Commons for Traumatic Brain Injury Research
title_fullStr Empowering Data Sharing and Analytics through the Open Data Commons for Traumatic Brain Injury Research
title_full_unstemmed Empowering Data Sharing and Analytics through the Open Data Commons for Traumatic Brain Injury Research
title_short Empowering Data Sharing and Analytics through the Open Data Commons for Traumatic Brain Injury Research
title_sort empowering data sharing and analytics through the open data commons for traumatic brain injury research
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8985540/
https://www.ncbi.nlm.nih.gov/pubmed/35403104
http://dx.doi.org/10.1089/neur.2021.0061
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