Cargando…
Comprehensive Analysis of Colorectal Cancer Immunity and Identification of Immune-Related Prognostic Targets
Colorectal cancer (COAD) is ranked as the third most common cancer and second in terms of cancer-related deaths worldwide. Due to its poor overall survival and prognosis, the incidents of COAD are significantly increasing. Although treatment methods have greatly been improved in the last decade, it...
Autores principales: | , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Hindawi
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8986440/ https://www.ncbi.nlm.nih.gov/pubmed/35401882 http://dx.doi.org/10.1155/2022/7932655 |
_version_ | 1784682546472157184 |
---|---|
author | Wen, Huijuan Li, Fazhan Bukhari, Ihtisham Mi, Yang Guo, Chenxu Liu, Bin Zheng, Pengyuan Liu, Simeng |
author_facet | Wen, Huijuan Li, Fazhan Bukhari, Ihtisham Mi, Yang Guo, Chenxu Liu, Bin Zheng, Pengyuan Liu, Simeng |
author_sort | Wen, Huijuan |
collection | PubMed |
description | Colorectal cancer (COAD) is ranked as the third most common cancer and second in terms of cancer-related deaths worldwide. Due to its poor overall survival and prognosis, the incidents of COAD are significantly increasing. Although treatment methods have greatly been improved in the last decade, it is still not good enough to have satisfactory treatment outcomes. In recent years, immunotherapy has been successful to some extent in the treatment of many cancers but still, many patients do not respond to immunotherapy. Therefore, it is essential to have a deeper understanding of the immune characteristics of the tumor microenvironment and identify meaningful immune targets. In terms of immune targets, COAD has been poorly explored; thus, in the current study, based on the immune cell infiltration score and differentially expressed genes, COAD tumors were classified into hot and cold tumors. The Least Absolute Shrinkage and Selection Operator (LASSO) regression analysis was used to identify hub genes, construct a prognostic model, and screen potential immune targets. In total, 12 genes (CLK3, CYSLTR2, GJA10, CYP4Z1, FAM185A, LINC00324, EEF1A1P34, EEF1B2P8, PTCSC3, MIR6780A, LINC01666, and RNU6.661P) differentially expressed between hot and cold tumors were screened out. Among them, CYSLTR2 was considered as a potential candidate gene, because it showed a significant positive correlation with immune cell infiltration and immune checkpoints (PDCD1, CD274, and CTLA4). Finally, we constructed and validated a new prognostic model for COAD showing 0.854 AUC for the ROC curve, and these results provide sufficient potential to choose CYSLTR2 as an important immune target for the prognosis of COAD. |
format | Online Article Text |
id | pubmed-8986440 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Hindawi |
record_format | MEDLINE/PubMed |
spelling | pubmed-89864402022-04-07 Comprehensive Analysis of Colorectal Cancer Immunity and Identification of Immune-Related Prognostic Targets Wen, Huijuan Li, Fazhan Bukhari, Ihtisham Mi, Yang Guo, Chenxu Liu, Bin Zheng, Pengyuan Liu, Simeng Dis Markers Research Article Colorectal cancer (COAD) is ranked as the third most common cancer and second in terms of cancer-related deaths worldwide. Due to its poor overall survival and prognosis, the incidents of COAD are significantly increasing. Although treatment methods have greatly been improved in the last decade, it is still not good enough to have satisfactory treatment outcomes. In recent years, immunotherapy has been successful to some extent in the treatment of many cancers but still, many patients do not respond to immunotherapy. Therefore, it is essential to have a deeper understanding of the immune characteristics of the tumor microenvironment and identify meaningful immune targets. In terms of immune targets, COAD has been poorly explored; thus, in the current study, based on the immune cell infiltration score and differentially expressed genes, COAD tumors were classified into hot and cold tumors. The Least Absolute Shrinkage and Selection Operator (LASSO) regression analysis was used to identify hub genes, construct a prognostic model, and screen potential immune targets. In total, 12 genes (CLK3, CYSLTR2, GJA10, CYP4Z1, FAM185A, LINC00324, EEF1A1P34, EEF1B2P8, PTCSC3, MIR6780A, LINC01666, and RNU6.661P) differentially expressed between hot and cold tumors were screened out. Among them, CYSLTR2 was considered as a potential candidate gene, because it showed a significant positive correlation with immune cell infiltration and immune checkpoints (PDCD1, CD274, and CTLA4). Finally, we constructed and validated a new prognostic model for COAD showing 0.854 AUC for the ROC curve, and these results provide sufficient potential to choose CYSLTR2 as an important immune target for the prognosis of COAD. Hindawi 2022-03-30 /pmc/articles/PMC8986440/ /pubmed/35401882 http://dx.doi.org/10.1155/2022/7932655 Text en Copyright © 2022 Huijuan Wen et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Article Wen, Huijuan Li, Fazhan Bukhari, Ihtisham Mi, Yang Guo, Chenxu Liu, Bin Zheng, Pengyuan Liu, Simeng Comprehensive Analysis of Colorectal Cancer Immunity and Identification of Immune-Related Prognostic Targets |
title | Comprehensive Analysis of Colorectal Cancer Immunity and Identification of Immune-Related Prognostic Targets |
title_full | Comprehensive Analysis of Colorectal Cancer Immunity and Identification of Immune-Related Prognostic Targets |
title_fullStr | Comprehensive Analysis of Colorectal Cancer Immunity and Identification of Immune-Related Prognostic Targets |
title_full_unstemmed | Comprehensive Analysis of Colorectal Cancer Immunity and Identification of Immune-Related Prognostic Targets |
title_short | Comprehensive Analysis of Colorectal Cancer Immunity and Identification of Immune-Related Prognostic Targets |
title_sort | comprehensive analysis of colorectal cancer immunity and identification of immune-related prognostic targets |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8986440/ https://www.ncbi.nlm.nih.gov/pubmed/35401882 http://dx.doi.org/10.1155/2022/7932655 |
work_keys_str_mv | AT wenhuijuan comprehensiveanalysisofcolorectalcancerimmunityandidentificationofimmunerelatedprognostictargets AT lifazhan comprehensiveanalysisofcolorectalcancerimmunityandidentificationofimmunerelatedprognostictargets AT bukhariihtisham comprehensiveanalysisofcolorectalcancerimmunityandidentificationofimmunerelatedprognostictargets AT miyang comprehensiveanalysisofcolorectalcancerimmunityandidentificationofimmunerelatedprognostictargets AT guochenxu comprehensiveanalysisofcolorectalcancerimmunityandidentificationofimmunerelatedprognostictargets AT liubin comprehensiveanalysisofcolorectalcancerimmunityandidentificationofimmunerelatedprognostictargets AT zhengpengyuan comprehensiveanalysisofcolorectalcancerimmunityandidentificationofimmunerelatedprognostictargets AT liusimeng comprehensiveanalysisofcolorectalcancerimmunityandidentificationofimmunerelatedprognostictargets |