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Accurate auto-labeling of chest X-ray images based on quantitative similarity to an explainable AI model
The inability to accurately, efficiently label large, open-access medical imaging datasets limits the widespread implementation of artificial intelligence models in healthcare. There have been few attempts, however, to automate the annotation of such public databases; one approach, for example, focu...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8986787/ https://www.ncbi.nlm.nih.gov/pubmed/35388010 http://dx.doi.org/10.1038/s41467-022-29437-8 |
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author | Kim, Doyun Chung, Joowon Choi, Jongmun Succi, Marc D. Conklin, John Longo, Maria Gabriela Figueiro Ackman, Jeanne B. Little, Brent P. Petranovic, Milena Kalra, Mannudeep K. Lev, Michael H. Do, Synho |
author_facet | Kim, Doyun Chung, Joowon Choi, Jongmun Succi, Marc D. Conklin, John Longo, Maria Gabriela Figueiro Ackman, Jeanne B. Little, Brent P. Petranovic, Milena Kalra, Mannudeep K. Lev, Michael H. Do, Synho |
author_sort | Kim, Doyun |
collection | PubMed |
description | The inability to accurately, efficiently label large, open-access medical imaging datasets limits the widespread implementation of artificial intelligence models in healthcare. There have been few attempts, however, to automate the annotation of such public databases; one approach, for example, focused on labor-intensive, manual labeling of subsets of these datasets to be used to train new models. In this study, we describe a method for standardized, automated labeling based on similarity to a previously validated, explainable AI (xAI) model-derived-atlas, for which the user can specify a quantitative threshold for a desired level of accuracy (the probability-of-similarity, pSim metric). We show that our xAI model, by calculating the pSim values for each clinical output label based on comparison to its training-set derived reference atlas, can automatically label the external datasets to a user-selected, high level of accuracy, equaling or exceeding that of human experts. We additionally show that, by fine-tuning the original model using the automatically labelled exams for retraining, performance can be preserved or improved, resulting in a highly accurate, more generalized model. |
format | Online Article Text |
id | pubmed-8986787 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-89867872022-04-22 Accurate auto-labeling of chest X-ray images based on quantitative similarity to an explainable AI model Kim, Doyun Chung, Joowon Choi, Jongmun Succi, Marc D. Conklin, John Longo, Maria Gabriela Figueiro Ackman, Jeanne B. Little, Brent P. Petranovic, Milena Kalra, Mannudeep K. Lev, Michael H. Do, Synho Nat Commun Article The inability to accurately, efficiently label large, open-access medical imaging datasets limits the widespread implementation of artificial intelligence models in healthcare. There have been few attempts, however, to automate the annotation of such public databases; one approach, for example, focused on labor-intensive, manual labeling of subsets of these datasets to be used to train new models. In this study, we describe a method for standardized, automated labeling based on similarity to a previously validated, explainable AI (xAI) model-derived-atlas, for which the user can specify a quantitative threshold for a desired level of accuracy (the probability-of-similarity, pSim metric). We show that our xAI model, by calculating the pSim values for each clinical output label based on comparison to its training-set derived reference atlas, can automatically label the external datasets to a user-selected, high level of accuracy, equaling or exceeding that of human experts. We additionally show that, by fine-tuning the original model using the automatically labelled exams for retraining, performance can be preserved or improved, resulting in a highly accurate, more generalized model. Nature Publishing Group UK 2022-04-06 /pmc/articles/PMC8986787/ /pubmed/35388010 http://dx.doi.org/10.1038/s41467-022-29437-8 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Kim, Doyun Chung, Joowon Choi, Jongmun Succi, Marc D. Conklin, John Longo, Maria Gabriela Figueiro Ackman, Jeanne B. Little, Brent P. Petranovic, Milena Kalra, Mannudeep K. Lev, Michael H. Do, Synho Accurate auto-labeling of chest X-ray images based on quantitative similarity to an explainable AI model |
title | Accurate auto-labeling of chest X-ray images based on quantitative similarity to an explainable AI model |
title_full | Accurate auto-labeling of chest X-ray images based on quantitative similarity to an explainable AI model |
title_fullStr | Accurate auto-labeling of chest X-ray images based on quantitative similarity to an explainable AI model |
title_full_unstemmed | Accurate auto-labeling of chest X-ray images based on quantitative similarity to an explainable AI model |
title_short | Accurate auto-labeling of chest X-ray images based on quantitative similarity to an explainable AI model |
title_sort | accurate auto-labeling of chest x-ray images based on quantitative similarity to an explainable ai model |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8986787/ https://www.ncbi.nlm.nih.gov/pubmed/35388010 http://dx.doi.org/10.1038/s41467-022-29437-8 |
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