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Identification of Hub Genes With Differential Correlations in Sepsis
As a multifaceted syndrome, sepsis leads to high risk of death worldwide. It is difficult to be intervened due to insufficient biomarkers and potential targets. The reason is that regulatory mechanisms during sepsis are poorly understood. In this study, expression profiles of sepsis from GSE134347 w...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8987114/ https://www.ncbi.nlm.nih.gov/pubmed/35401666 http://dx.doi.org/10.3389/fgene.2022.876514 |
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author | Sheng, Lulu Tong, Yiqing Zhang, Yi Feng, Qiming |
author_facet | Sheng, Lulu Tong, Yiqing Zhang, Yi Feng, Qiming |
author_sort | Sheng, Lulu |
collection | PubMed |
description | As a multifaceted syndrome, sepsis leads to high risk of death worldwide. It is difficult to be intervened due to insufficient biomarkers and potential targets. The reason is that regulatory mechanisms during sepsis are poorly understood. In this study, expression profiles of sepsis from GSE134347 were integrated to construct gene interaction network through weighted gene co-expression network analysis (WGCNA). R package DiffCorr was utilized to evaluate differential correlations and identify significant differences between sepsis and healthy tissues. As a result, twenty-six modules were detected in the network, among which blue and darkred modules exhibited the most significant associations with sepsis. Finally, we identified some novel genes with opposite correlations including ZNF366, ZMYND11, SVIP and UBE2H. Further biological analysis revealed their promising roles in sepsis management. Hence, differential correlations-based algorithm was firstly established for the discovery of appealing regulators in sepsis. |
format | Online Article Text |
id | pubmed-8987114 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-89871142022-04-08 Identification of Hub Genes With Differential Correlations in Sepsis Sheng, Lulu Tong, Yiqing Zhang, Yi Feng, Qiming Front Genet Genetics As a multifaceted syndrome, sepsis leads to high risk of death worldwide. It is difficult to be intervened due to insufficient biomarkers and potential targets. The reason is that regulatory mechanisms during sepsis are poorly understood. In this study, expression profiles of sepsis from GSE134347 were integrated to construct gene interaction network through weighted gene co-expression network analysis (WGCNA). R package DiffCorr was utilized to evaluate differential correlations and identify significant differences between sepsis and healthy tissues. As a result, twenty-six modules were detected in the network, among which blue and darkred modules exhibited the most significant associations with sepsis. Finally, we identified some novel genes with opposite correlations including ZNF366, ZMYND11, SVIP and UBE2H. Further biological analysis revealed their promising roles in sepsis management. Hence, differential correlations-based algorithm was firstly established for the discovery of appealing regulators in sepsis. Frontiers Media S.A. 2022-03-24 /pmc/articles/PMC8987114/ /pubmed/35401666 http://dx.doi.org/10.3389/fgene.2022.876514 Text en Copyright © 2022 Sheng, Tong, Zhang and Feng. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Genetics Sheng, Lulu Tong, Yiqing Zhang, Yi Feng, Qiming Identification of Hub Genes With Differential Correlations in Sepsis |
title | Identification of Hub Genes With Differential Correlations in Sepsis |
title_full | Identification of Hub Genes With Differential Correlations in Sepsis |
title_fullStr | Identification of Hub Genes With Differential Correlations in Sepsis |
title_full_unstemmed | Identification of Hub Genes With Differential Correlations in Sepsis |
title_short | Identification of Hub Genes With Differential Correlations in Sepsis |
title_sort | identification of hub genes with differential correlations in sepsis |
topic | Genetics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8987114/ https://www.ncbi.nlm.nih.gov/pubmed/35401666 http://dx.doi.org/10.3389/fgene.2022.876514 |
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