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rbcL gene in global molecular data repository
The ribulose-bisphosphate carboxylase (rbcL) gene sequence data in the molecular data repository has been increasing significantly, over the years with contributions from different parts of the world. The abundance of the gene has enhanced its applications in several ways. Bulk records were obtained...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8987485/ https://www.ncbi.nlm.nih.gov/pubmed/35402671 http://dx.doi.org/10.1016/j.dib.2022.108090 |
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author | Omonhinmin, Conrad Onuselogu, Chinedu |
author_facet | Omonhinmin, Conrad Onuselogu, Chinedu |
author_sort | Omonhinmin, Conrad |
collection | PubMed |
description | The ribulose-bisphosphate carboxylase (rbcL) gene sequence data in the molecular data repository has been increasing significantly, over the years with contributions from different parts of the world. The abundance of the gene has enhanced its applications in several ways. Bulk records were obtained from National Center for Biotechnology Information (NCBI) GenBank database using the entrez efetch utility as implemented in the Biopython package version 1.77. Records corresponding to the following keywords “rbcL AND plants [filter] AND biomol_genomic [PROP] AND is _nuccore [filter]” were created. Generated records were cleaned and then further analysed using the code file in the supplementary materials. Country information was obtained by searching reference information for matches to countries present in the pycountry package. Where no match was found, null was returned. This data article contains information about the plant family and species whose rbcL gene sequence has been deposited on the NCBI and regions of the world that has contributed to the rbcL repository growth. This data can be used to analyse the intra and inter family relatedness of plant and compare with existing relationships the molecular characterization of plants, evolutionary relationship studies, inferring biogeography origin of plant. |
format | Online Article Text |
id | pubmed-8987485 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-89874852022-04-08 rbcL gene in global molecular data repository Omonhinmin, Conrad Onuselogu, Chinedu Data Brief Data Article The ribulose-bisphosphate carboxylase (rbcL) gene sequence data in the molecular data repository has been increasing significantly, over the years with contributions from different parts of the world. The abundance of the gene has enhanced its applications in several ways. Bulk records were obtained from National Center for Biotechnology Information (NCBI) GenBank database using the entrez efetch utility as implemented in the Biopython package version 1.77. Records corresponding to the following keywords “rbcL AND plants [filter] AND biomol_genomic [PROP] AND is _nuccore [filter]” were created. Generated records were cleaned and then further analysed using the code file in the supplementary materials. Country information was obtained by searching reference information for matches to countries present in the pycountry package. Where no match was found, null was returned. This data article contains information about the plant family and species whose rbcL gene sequence has been deposited on the NCBI and regions of the world that has contributed to the rbcL repository growth. This data can be used to analyse the intra and inter family relatedness of plant and compare with existing relationships the molecular characterization of plants, evolutionary relationship studies, inferring biogeography origin of plant. Elsevier 2022-03-23 /pmc/articles/PMC8987485/ /pubmed/35402671 http://dx.doi.org/10.1016/j.dib.2022.108090 Text en © 2022 Published by Elsevier Inc. https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Data Article Omonhinmin, Conrad Onuselogu, Chinedu rbcL gene in global molecular data repository |
title | rbcL gene in global molecular data repository |
title_full | rbcL gene in global molecular data repository |
title_fullStr | rbcL gene in global molecular data repository |
title_full_unstemmed | rbcL gene in global molecular data repository |
title_short | rbcL gene in global molecular data repository |
title_sort | rbcl gene in global molecular data repository |
topic | Data Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8987485/ https://www.ncbi.nlm.nih.gov/pubmed/35402671 http://dx.doi.org/10.1016/j.dib.2022.108090 |
work_keys_str_mv | AT omonhinminconrad rbclgeneinglobalmoleculardatarepository AT onuseloguchinedu rbclgeneinglobalmoleculardatarepository |