Cargando…

rbcL gene in global molecular data repository

The ribulose-bisphosphate carboxylase (rbcL) gene sequence data in the molecular data repository has been increasing significantly, over the years with contributions from different parts of the world. The abundance of the gene has enhanced its applications in several ways. Bulk records were obtained...

Descripción completa

Detalles Bibliográficos
Autores principales: Omonhinmin, Conrad, Onuselogu, Chinedu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8987485/
https://www.ncbi.nlm.nih.gov/pubmed/35402671
http://dx.doi.org/10.1016/j.dib.2022.108090
_version_ 1784682752795213824
author Omonhinmin, Conrad
Onuselogu, Chinedu
author_facet Omonhinmin, Conrad
Onuselogu, Chinedu
author_sort Omonhinmin, Conrad
collection PubMed
description The ribulose-bisphosphate carboxylase (rbcL) gene sequence data in the molecular data repository has been increasing significantly, over the years with contributions from different parts of the world. The abundance of the gene has enhanced its applications in several ways. Bulk records were obtained from National Center for Biotechnology Information (NCBI) GenBank database using the entrez efetch utility as implemented in the Biopython package version 1.77. Records corresponding to the following keywords “rbcL AND plants [filter] AND biomol_genomic [PROP] AND is _nuccore [filter]” were created. Generated records were cleaned and then further analysed using the code file in the supplementary materials. Country information was obtained by searching reference information for matches to countries present in the pycountry package. Where no match was found, null was returned. This data article contains information about the plant family and species whose rbcL gene sequence has been deposited on the NCBI and regions of the world that has contributed to the rbcL repository growth. This data can be used to analyse the intra and inter family relatedness of plant and compare with existing relationships the molecular characterization of plants, evolutionary relationship studies, inferring biogeography origin of plant.
format Online
Article
Text
id pubmed-8987485
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Elsevier
record_format MEDLINE/PubMed
spelling pubmed-89874852022-04-08 rbcL gene in global molecular data repository Omonhinmin, Conrad Onuselogu, Chinedu Data Brief Data Article The ribulose-bisphosphate carboxylase (rbcL) gene sequence data in the molecular data repository has been increasing significantly, over the years with contributions from different parts of the world. The abundance of the gene has enhanced its applications in several ways. Bulk records were obtained from National Center for Biotechnology Information (NCBI) GenBank database using the entrez efetch utility as implemented in the Biopython package version 1.77. Records corresponding to the following keywords “rbcL AND plants [filter] AND biomol_genomic [PROP] AND is _nuccore [filter]” were created. Generated records were cleaned and then further analysed using the code file in the supplementary materials. Country information was obtained by searching reference information for matches to countries present in the pycountry package. Where no match was found, null was returned. This data article contains information about the plant family and species whose rbcL gene sequence has been deposited on the NCBI and regions of the world that has contributed to the rbcL repository growth. This data can be used to analyse the intra and inter family relatedness of plant and compare with existing relationships the molecular characterization of plants, evolutionary relationship studies, inferring biogeography origin of plant. Elsevier 2022-03-23 /pmc/articles/PMC8987485/ /pubmed/35402671 http://dx.doi.org/10.1016/j.dib.2022.108090 Text en © 2022 Published by Elsevier Inc. https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Data Article
Omonhinmin, Conrad
Onuselogu, Chinedu
rbcL gene in global molecular data repository
title rbcL gene in global molecular data repository
title_full rbcL gene in global molecular data repository
title_fullStr rbcL gene in global molecular data repository
title_full_unstemmed rbcL gene in global molecular data repository
title_short rbcL gene in global molecular data repository
title_sort rbcl gene in global molecular data repository
topic Data Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8987485/
https://www.ncbi.nlm.nih.gov/pubmed/35402671
http://dx.doi.org/10.1016/j.dib.2022.108090
work_keys_str_mv AT omonhinminconrad rbclgeneinglobalmoleculardatarepository
AT onuseloguchinedu rbclgeneinglobalmoleculardatarepository