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Expert-augmented automated machine learning optimizes hemodynamic predictors of spinal cord injury outcome

Artificial intelligence and machine learning (AI/ML) is becoming increasingly more accessible to biomedical researchers with significant potential to transform biomedicine through optimization of highly-accurate predictive models and enabling better understanding of disease biology. Automated machin...

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Autores principales: Chou, Austin, Torres-Espin, Abel, Kyritsis, Nikos, Huie, J. Russell, Khatry, Sarah, Funk, Jeremy, Hay, Jennifer, Lofgreen, Andrew, Shah, Rajiv, McCann, Chandler, Pascual, Lisa U., Amorim, Edilberto, Weinstein, Philip R., Manley, Geoffrey T., Dhall, Sanjay S., Pan, Jonathan Z., Bresnahan, Jacqueline C., Beattie, Michael S., Whetstone, William D., Ferguson, Adam R.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8989303/
https://www.ncbi.nlm.nih.gov/pubmed/35390006
http://dx.doi.org/10.1371/journal.pone.0265254
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author Chou, Austin
Torres-Espin, Abel
Kyritsis, Nikos
Huie, J. Russell
Khatry, Sarah
Funk, Jeremy
Hay, Jennifer
Lofgreen, Andrew
Shah, Rajiv
McCann, Chandler
Pascual, Lisa U.
Amorim, Edilberto
Weinstein, Philip R.
Manley, Geoffrey T.
Dhall, Sanjay S.
Pan, Jonathan Z.
Bresnahan, Jacqueline C.
Beattie, Michael S.
Whetstone, William D.
Ferguson, Adam R.
author_facet Chou, Austin
Torres-Espin, Abel
Kyritsis, Nikos
Huie, J. Russell
Khatry, Sarah
Funk, Jeremy
Hay, Jennifer
Lofgreen, Andrew
Shah, Rajiv
McCann, Chandler
Pascual, Lisa U.
Amorim, Edilberto
Weinstein, Philip R.
Manley, Geoffrey T.
Dhall, Sanjay S.
Pan, Jonathan Z.
Bresnahan, Jacqueline C.
Beattie, Michael S.
Whetstone, William D.
Ferguson, Adam R.
author_sort Chou, Austin
collection PubMed
description Artificial intelligence and machine learning (AI/ML) is becoming increasingly more accessible to biomedical researchers with significant potential to transform biomedicine through optimization of highly-accurate predictive models and enabling better understanding of disease biology. Automated machine learning (AutoML) in particular is positioned to democratize artificial intelligence (AI) by reducing the amount of human input and ML expertise needed. However, successful translation of AI/ML in biomedicine requires moving beyond optimizing only for prediction accuracy and towards establishing reproducible clinical and biological inferences. This is especially challenging for clinical studies on rare disorders where the smaller patient cohorts and corresponding sample size is an obstacle for reproducible modeling results. Here, we present a model-agnostic framework to reinforce AutoML using strategies and tools of explainable and reproducible AI, including novel metrics to assess model reproducibility. The framework enables clinicians to interpret AutoML-generated models for clinical and biological verifiability and consequently integrate domain expertise during model development. We applied the framework towards spinal cord injury prognostication to optimize the intraoperative hemodynamic range during injury-related surgery and additionally identified a strong detrimental relationship between intraoperative hypertension and patient outcome. Furthermore, our analysis captured how evolving clinical practices such as faster time-to-surgery and blood pressure management affect clinical model development. Altogether, we illustrate how expert-augmented AutoML improves inferential reproducibility for biomedical discovery and can ultimately build trust in AI processes towards effective clinical integration.
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spelling pubmed-89893032022-04-08 Expert-augmented automated machine learning optimizes hemodynamic predictors of spinal cord injury outcome Chou, Austin Torres-Espin, Abel Kyritsis, Nikos Huie, J. Russell Khatry, Sarah Funk, Jeremy Hay, Jennifer Lofgreen, Andrew Shah, Rajiv McCann, Chandler Pascual, Lisa U. Amorim, Edilberto Weinstein, Philip R. Manley, Geoffrey T. Dhall, Sanjay S. Pan, Jonathan Z. Bresnahan, Jacqueline C. Beattie, Michael S. Whetstone, William D. Ferguson, Adam R. PLoS One Research Article Artificial intelligence and machine learning (AI/ML) is becoming increasingly more accessible to biomedical researchers with significant potential to transform biomedicine through optimization of highly-accurate predictive models and enabling better understanding of disease biology. Automated machine learning (AutoML) in particular is positioned to democratize artificial intelligence (AI) by reducing the amount of human input and ML expertise needed. However, successful translation of AI/ML in biomedicine requires moving beyond optimizing only for prediction accuracy and towards establishing reproducible clinical and biological inferences. This is especially challenging for clinical studies on rare disorders where the smaller patient cohorts and corresponding sample size is an obstacle for reproducible modeling results. Here, we present a model-agnostic framework to reinforce AutoML using strategies and tools of explainable and reproducible AI, including novel metrics to assess model reproducibility. The framework enables clinicians to interpret AutoML-generated models for clinical and biological verifiability and consequently integrate domain expertise during model development. We applied the framework towards spinal cord injury prognostication to optimize the intraoperative hemodynamic range during injury-related surgery and additionally identified a strong detrimental relationship between intraoperative hypertension and patient outcome. Furthermore, our analysis captured how evolving clinical practices such as faster time-to-surgery and blood pressure management affect clinical model development. Altogether, we illustrate how expert-augmented AutoML improves inferential reproducibility for biomedical discovery and can ultimately build trust in AI processes towards effective clinical integration. Public Library of Science 2022-04-07 /pmc/articles/PMC8989303/ /pubmed/35390006 http://dx.doi.org/10.1371/journal.pone.0265254 Text en © 2022 Chou et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Chou, Austin
Torres-Espin, Abel
Kyritsis, Nikos
Huie, J. Russell
Khatry, Sarah
Funk, Jeremy
Hay, Jennifer
Lofgreen, Andrew
Shah, Rajiv
McCann, Chandler
Pascual, Lisa U.
Amorim, Edilberto
Weinstein, Philip R.
Manley, Geoffrey T.
Dhall, Sanjay S.
Pan, Jonathan Z.
Bresnahan, Jacqueline C.
Beattie, Michael S.
Whetstone, William D.
Ferguson, Adam R.
Expert-augmented automated machine learning optimizes hemodynamic predictors of spinal cord injury outcome
title Expert-augmented automated machine learning optimizes hemodynamic predictors of spinal cord injury outcome
title_full Expert-augmented automated machine learning optimizes hemodynamic predictors of spinal cord injury outcome
title_fullStr Expert-augmented automated machine learning optimizes hemodynamic predictors of spinal cord injury outcome
title_full_unstemmed Expert-augmented automated machine learning optimizes hemodynamic predictors of spinal cord injury outcome
title_short Expert-augmented automated machine learning optimizes hemodynamic predictors of spinal cord injury outcome
title_sort expert-augmented automated machine learning optimizes hemodynamic predictors of spinal cord injury outcome
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8989303/
https://www.ncbi.nlm.nih.gov/pubmed/35390006
http://dx.doi.org/10.1371/journal.pone.0265254
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