Cargando…
Expert-augmented automated machine learning optimizes hemodynamic predictors of spinal cord injury outcome
Artificial intelligence and machine learning (AI/ML) is becoming increasingly more accessible to biomedical researchers with significant potential to transform biomedicine through optimization of highly-accurate predictive models and enabling better understanding of disease biology. Automated machin...
Autores principales: | , , , , , , , , , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8989303/ https://www.ncbi.nlm.nih.gov/pubmed/35390006 http://dx.doi.org/10.1371/journal.pone.0265254 |
_version_ | 1784683140251385856 |
---|---|
author | Chou, Austin Torres-Espin, Abel Kyritsis, Nikos Huie, J. Russell Khatry, Sarah Funk, Jeremy Hay, Jennifer Lofgreen, Andrew Shah, Rajiv McCann, Chandler Pascual, Lisa U. Amorim, Edilberto Weinstein, Philip R. Manley, Geoffrey T. Dhall, Sanjay S. Pan, Jonathan Z. Bresnahan, Jacqueline C. Beattie, Michael S. Whetstone, William D. Ferguson, Adam R. |
author_facet | Chou, Austin Torres-Espin, Abel Kyritsis, Nikos Huie, J. Russell Khatry, Sarah Funk, Jeremy Hay, Jennifer Lofgreen, Andrew Shah, Rajiv McCann, Chandler Pascual, Lisa U. Amorim, Edilberto Weinstein, Philip R. Manley, Geoffrey T. Dhall, Sanjay S. Pan, Jonathan Z. Bresnahan, Jacqueline C. Beattie, Michael S. Whetstone, William D. Ferguson, Adam R. |
author_sort | Chou, Austin |
collection | PubMed |
description | Artificial intelligence and machine learning (AI/ML) is becoming increasingly more accessible to biomedical researchers with significant potential to transform biomedicine through optimization of highly-accurate predictive models and enabling better understanding of disease biology. Automated machine learning (AutoML) in particular is positioned to democratize artificial intelligence (AI) by reducing the amount of human input and ML expertise needed. However, successful translation of AI/ML in biomedicine requires moving beyond optimizing only for prediction accuracy and towards establishing reproducible clinical and biological inferences. This is especially challenging for clinical studies on rare disorders where the smaller patient cohorts and corresponding sample size is an obstacle for reproducible modeling results. Here, we present a model-agnostic framework to reinforce AutoML using strategies and tools of explainable and reproducible AI, including novel metrics to assess model reproducibility. The framework enables clinicians to interpret AutoML-generated models for clinical and biological verifiability and consequently integrate domain expertise during model development. We applied the framework towards spinal cord injury prognostication to optimize the intraoperative hemodynamic range during injury-related surgery and additionally identified a strong detrimental relationship between intraoperative hypertension and patient outcome. Furthermore, our analysis captured how evolving clinical practices such as faster time-to-surgery and blood pressure management affect clinical model development. Altogether, we illustrate how expert-augmented AutoML improves inferential reproducibility for biomedical discovery and can ultimately build trust in AI processes towards effective clinical integration. |
format | Online Article Text |
id | pubmed-8989303 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-89893032022-04-08 Expert-augmented automated machine learning optimizes hemodynamic predictors of spinal cord injury outcome Chou, Austin Torres-Espin, Abel Kyritsis, Nikos Huie, J. Russell Khatry, Sarah Funk, Jeremy Hay, Jennifer Lofgreen, Andrew Shah, Rajiv McCann, Chandler Pascual, Lisa U. Amorim, Edilberto Weinstein, Philip R. Manley, Geoffrey T. Dhall, Sanjay S. Pan, Jonathan Z. Bresnahan, Jacqueline C. Beattie, Michael S. Whetstone, William D. Ferguson, Adam R. PLoS One Research Article Artificial intelligence and machine learning (AI/ML) is becoming increasingly more accessible to biomedical researchers with significant potential to transform biomedicine through optimization of highly-accurate predictive models and enabling better understanding of disease biology. Automated machine learning (AutoML) in particular is positioned to democratize artificial intelligence (AI) by reducing the amount of human input and ML expertise needed. However, successful translation of AI/ML in biomedicine requires moving beyond optimizing only for prediction accuracy and towards establishing reproducible clinical and biological inferences. This is especially challenging for clinical studies on rare disorders where the smaller patient cohorts and corresponding sample size is an obstacle for reproducible modeling results. Here, we present a model-agnostic framework to reinforce AutoML using strategies and tools of explainable and reproducible AI, including novel metrics to assess model reproducibility. The framework enables clinicians to interpret AutoML-generated models for clinical and biological verifiability and consequently integrate domain expertise during model development. We applied the framework towards spinal cord injury prognostication to optimize the intraoperative hemodynamic range during injury-related surgery and additionally identified a strong detrimental relationship between intraoperative hypertension and patient outcome. Furthermore, our analysis captured how evolving clinical practices such as faster time-to-surgery and blood pressure management affect clinical model development. Altogether, we illustrate how expert-augmented AutoML improves inferential reproducibility for biomedical discovery and can ultimately build trust in AI processes towards effective clinical integration. Public Library of Science 2022-04-07 /pmc/articles/PMC8989303/ /pubmed/35390006 http://dx.doi.org/10.1371/journal.pone.0265254 Text en © 2022 Chou et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Chou, Austin Torres-Espin, Abel Kyritsis, Nikos Huie, J. Russell Khatry, Sarah Funk, Jeremy Hay, Jennifer Lofgreen, Andrew Shah, Rajiv McCann, Chandler Pascual, Lisa U. Amorim, Edilberto Weinstein, Philip R. Manley, Geoffrey T. Dhall, Sanjay S. Pan, Jonathan Z. Bresnahan, Jacqueline C. Beattie, Michael S. Whetstone, William D. Ferguson, Adam R. Expert-augmented automated machine learning optimizes hemodynamic predictors of spinal cord injury outcome |
title | Expert-augmented automated machine learning optimizes hemodynamic predictors of spinal cord injury outcome |
title_full | Expert-augmented automated machine learning optimizes hemodynamic predictors of spinal cord injury outcome |
title_fullStr | Expert-augmented automated machine learning optimizes hemodynamic predictors of spinal cord injury outcome |
title_full_unstemmed | Expert-augmented automated machine learning optimizes hemodynamic predictors of spinal cord injury outcome |
title_short | Expert-augmented automated machine learning optimizes hemodynamic predictors of spinal cord injury outcome |
title_sort | expert-augmented automated machine learning optimizes hemodynamic predictors of spinal cord injury outcome |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8989303/ https://www.ncbi.nlm.nih.gov/pubmed/35390006 http://dx.doi.org/10.1371/journal.pone.0265254 |
work_keys_str_mv | AT chouaustin expertaugmentedautomatedmachinelearningoptimizeshemodynamicpredictorsofspinalcordinjuryoutcome AT torresespinabel expertaugmentedautomatedmachinelearningoptimizeshemodynamicpredictorsofspinalcordinjuryoutcome AT kyritsisnikos expertaugmentedautomatedmachinelearningoptimizeshemodynamicpredictorsofspinalcordinjuryoutcome AT huiejrussell expertaugmentedautomatedmachinelearningoptimizeshemodynamicpredictorsofspinalcordinjuryoutcome AT khatrysarah expertaugmentedautomatedmachinelearningoptimizeshemodynamicpredictorsofspinalcordinjuryoutcome AT funkjeremy expertaugmentedautomatedmachinelearningoptimizeshemodynamicpredictorsofspinalcordinjuryoutcome AT hayjennifer expertaugmentedautomatedmachinelearningoptimizeshemodynamicpredictorsofspinalcordinjuryoutcome AT lofgreenandrew expertaugmentedautomatedmachinelearningoptimizeshemodynamicpredictorsofspinalcordinjuryoutcome AT shahrajiv expertaugmentedautomatedmachinelearningoptimizeshemodynamicpredictorsofspinalcordinjuryoutcome AT mccannchandler expertaugmentedautomatedmachinelearningoptimizeshemodynamicpredictorsofspinalcordinjuryoutcome AT pascuallisau expertaugmentedautomatedmachinelearningoptimizeshemodynamicpredictorsofspinalcordinjuryoutcome AT amorimedilberto expertaugmentedautomatedmachinelearningoptimizeshemodynamicpredictorsofspinalcordinjuryoutcome AT weinsteinphilipr expertaugmentedautomatedmachinelearningoptimizeshemodynamicpredictorsofspinalcordinjuryoutcome AT manleygeoffreyt expertaugmentedautomatedmachinelearningoptimizeshemodynamicpredictorsofspinalcordinjuryoutcome AT dhallsanjays expertaugmentedautomatedmachinelearningoptimizeshemodynamicpredictorsofspinalcordinjuryoutcome AT panjonathanz expertaugmentedautomatedmachinelearningoptimizeshemodynamicpredictorsofspinalcordinjuryoutcome AT bresnahanjacquelinec expertaugmentedautomatedmachinelearningoptimizeshemodynamicpredictorsofspinalcordinjuryoutcome AT beattiemichaels expertaugmentedautomatedmachinelearningoptimizeshemodynamicpredictorsofspinalcordinjuryoutcome AT whetstonewilliamd expertaugmentedautomatedmachinelearningoptimizeshemodynamicpredictorsofspinalcordinjuryoutcome AT fergusonadamr expertaugmentedautomatedmachinelearningoptimizeshemodynamicpredictorsofspinalcordinjuryoutcome AT expertaugmentedautomatedmachinelearningoptimizeshemodynamicpredictorsofspinalcordinjuryoutcome |