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Integrative analysis of TRPV family to prognosis and immune infiltration in renal clear cell carcinoma

The transient receptor potential vanilloid (TRPV) family has been preliminarily discovered to play an important role in various cancers, including clear cell renal cell carcinoma (ccRCC), which is closely associated with immune infiltration. However, the expression and prognosis of TRPV family and t...

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Autores principales: Gong, Zixuan, Xie, Jiaheng, Chen, Liang, Tang, Qikai, Hu, Yiming, Xu, Aiming, Wang, Zengjun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8993079/
https://www.ncbi.nlm.nih.gov/pubmed/35389815
http://dx.doi.org/10.1080/19336950.2022.2058733
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author Gong, Zixuan
Xie, Jiaheng
Chen, Liang
Tang, Qikai
Hu, Yiming
Xu, Aiming
Wang, Zengjun
author_facet Gong, Zixuan
Xie, Jiaheng
Chen, Liang
Tang, Qikai
Hu, Yiming
Xu, Aiming
Wang, Zengjun
author_sort Gong, Zixuan
collection PubMed
description The transient receptor potential vanilloid (TRPV) family has been preliminarily discovered to play an important role in various cancers, including clear cell renal cell carcinoma (ccRCC), which is closely associated with immune infiltration. However, the expression and prognosis of TRPV family and tumor-infiltrating immune cells in ccRCC are obscure. This study aimed to explore the prognostic and therapeutic value of the TRPV family expression in ccRCC from the perspective of bioinformatics. We analyzed the transcriptome and clinical data of kidney renal clear cell carcinoma (KIRC) from The Cancer Genome Atlas (TCGA) database. A clustering analysis and immune infiltration analysis were conducted to investigate the influence of the TRPV family genes on ccRCC. Our study found that the TRPV family is an excellent prognostic stratification for ccRCC. Among them, TRPV3 is the most significant prognostic marker of ccRCC. In addition, we performed a drug sensitivity analysis to identify the drugs with the strongest association with TRPV3. As a result, the TRPV family, particularly TRPV3, can act as a prognostic biomarker in ccRCC to determine prognosis and levels of immune infiltration.
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spelling pubmed-89930792022-04-09 Integrative analysis of TRPV family to prognosis and immune infiltration in renal clear cell carcinoma Gong, Zixuan Xie, Jiaheng Chen, Liang Tang, Qikai Hu, Yiming Xu, Aiming Wang, Zengjun Channels (Austin) Research Paper The transient receptor potential vanilloid (TRPV) family has been preliminarily discovered to play an important role in various cancers, including clear cell renal cell carcinoma (ccRCC), which is closely associated with immune infiltration. However, the expression and prognosis of TRPV family and tumor-infiltrating immune cells in ccRCC are obscure. This study aimed to explore the prognostic and therapeutic value of the TRPV family expression in ccRCC from the perspective of bioinformatics. We analyzed the transcriptome and clinical data of kidney renal clear cell carcinoma (KIRC) from The Cancer Genome Atlas (TCGA) database. A clustering analysis and immune infiltration analysis were conducted to investigate the influence of the TRPV family genes on ccRCC. Our study found that the TRPV family is an excellent prognostic stratification for ccRCC. Among them, TRPV3 is the most significant prognostic marker of ccRCC. In addition, we performed a drug sensitivity analysis to identify the drugs with the strongest association with TRPV3. As a result, the TRPV family, particularly TRPV3, can act as a prognostic biomarker in ccRCC to determine prognosis and levels of immune infiltration. Taylor & Francis 2022-04-07 /pmc/articles/PMC8993079/ /pubmed/35389815 http://dx.doi.org/10.1080/19336950.2022.2058733 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Paper
Gong, Zixuan
Xie, Jiaheng
Chen, Liang
Tang, Qikai
Hu, Yiming
Xu, Aiming
Wang, Zengjun
Integrative analysis of TRPV family to prognosis and immune infiltration in renal clear cell carcinoma
title Integrative analysis of TRPV family to prognosis and immune infiltration in renal clear cell carcinoma
title_full Integrative analysis of TRPV family to prognosis and immune infiltration in renal clear cell carcinoma
title_fullStr Integrative analysis of TRPV family to prognosis and immune infiltration in renal clear cell carcinoma
title_full_unstemmed Integrative analysis of TRPV family to prognosis and immune infiltration in renal clear cell carcinoma
title_short Integrative analysis of TRPV family to prognosis and immune infiltration in renal clear cell carcinoma
title_sort integrative analysis of trpv family to prognosis and immune infiltration in renal clear cell carcinoma
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8993079/
https://www.ncbi.nlm.nih.gov/pubmed/35389815
http://dx.doi.org/10.1080/19336950.2022.2058733
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