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Integrative analysis of TRPV family to prognosis and immune infiltration in renal clear cell carcinoma
The transient receptor potential vanilloid (TRPV) family has been preliminarily discovered to play an important role in various cancers, including clear cell renal cell carcinoma (ccRCC), which is closely associated with immune infiltration. However, the expression and prognosis of TRPV family and t...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8993079/ https://www.ncbi.nlm.nih.gov/pubmed/35389815 http://dx.doi.org/10.1080/19336950.2022.2058733 |
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author | Gong, Zixuan Xie, Jiaheng Chen, Liang Tang, Qikai Hu, Yiming Xu, Aiming Wang, Zengjun |
author_facet | Gong, Zixuan Xie, Jiaheng Chen, Liang Tang, Qikai Hu, Yiming Xu, Aiming Wang, Zengjun |
author_sort | Gong, Zixuan |
collection | PubMed |
description | The transient receptor potential vanilloid (TRPV) family has been preliminarily discovered to play an important role in various cancers, including clear cell renal cell carcinoma (ccRCC), which is closely associated with immune infiltration. However, the expression and prognosis of TRPV family and tumor-infiltrating immune cells in ccRCC are obscure. This study aimed to explore the prognostic and therapeutic value of the TRPV family expression in ccRCC from the perspective of bioinformatics. We analyzed the transcriptome and clinical data of kidney renal clear cell carcinoma (KIRC) from The Cancer Genome Atlas (TCGA) database. A clustering analysis and immune infiltration analysis were conducted to investigate the influence of the TRPV family genes on ccRCC. Our study found that the TRPV family is an excellent prognostic stratification for ccRCC. Among them, TRPV3 is the most significant prognostic marker of ccRCC. In addition, we performed a drug sensitivity analysis to identify the drugs with the strongest association with TRPV3. As a result, the TRPV family, particularly TRPV3, can act as a prognostic biomarker in ccRCC to determine prognosis and levels of immune infiltration. |
format | Online Article Text |
id | pubmed-8993079 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-89930792022-04-09 Integrative analysis of TRPV family to prognosis and immune infiltration in renal clear cell carcinoma Gong, Zixuan Xie, Jiaheng Chen, Liang Tang, Qikai Hu, Yiming Xu, Aiming Wang, Zengjun Channels (Austin) Research Paper The transient receptor potential vanilloid (TRPV) family has been preliminarily discovered to play an important role in various cancers, including clear cell renal cell carcinoma (ccRCC), which is closely associated with immune infiltration. However, the expression and prognosis of TRPV family and tumor-infiltrating immune cells in ccRCC are obscure. This study aimed to explore the prognostic and therapeutic value of the TRPV family expression in ccRCC from the perspective of bioinformatics. We analyzed the transcriptome and clinical data of kidney renal clear cell carcinoma (KIRC) from The Cancer Genome Atlas (TCGA) database. A clustering analysis and immune infiltration analysis were conducted to investigate the influence of the TRPV family genes on ccRCC. Our study found that the TRPV family is an excellent prognostic stratification for ccRCC. Among them, TRPV3 is the most significant prognostic marker of ccRCC. In addition, we performed a drug sensitivity analysis to identify the drugs with the strongest association with TRPV3. As a result, the TRPV family, particularly TRPV3, can act as a prognostic biomarker in ccRCC to determine prognosis and levels of immune infiltration. Taylor & Francis 2022-04-07 /pmc/articles/PMC8993079/ /pubmed/35389815 http://dx.doi.org/10.1080/19336950.2022.2058733 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Paper Gong, Zixuan Xie, Jiaheng Chen, Liang Tang, Qikai Hu, Yiming Xu, Aiming Wang, Zengjun Integrative analysis of TRPV family to prognosis and immune infiltration in renal clear cell carcinoma |
title | Integrative analysis of TRPV family to prognosis and immune infiltration in renal clear cell carcinoma |
title_full | Integrative analysis of TRPV family to prognosis and immune infiltration in renal clear cell carcinoma |
title_fullStr | Integrative analysis of TRPV family to prognosis and immune infiltration in renal clear cell carcinoma |
title_full_unstemmed | Integrative analysis of TRPV family to prognosis and immune infiltration in renal clear cell carcinoma |
title_short | Integrative analysis of TRPV family to prognosis and immune infiltration in renal clear cell carcinoma |
title_sort | integrative analysis of trpv family to prognosis and immune infiltration in renal clear cell carcinoma |
topic | Research Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8993079/ https://www.ncbi.nlm.nih.gov/pubmed/35389815 http://dx.doi.org/10.1080/19336950.2022.2058733 |
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