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A composite ranking of risk factors for COVID-19 time-to-event data from a Turkish cohort
Having a complete and reliable list of risk factors from routine laboratory blood test for COVID-19 disease severity and mortality is important for patient care and hospital management. It is common to use meta-analysis to combine analysis results from different studies to make it more reproducible....
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier Ltd.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8993420/ https://www.ncbi.nlm.nih.gov/pubmed/35487152 http://dx.doi.org/10.1016/j.compbiolchem.2022.107681 |
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author | Ulgen, Ayse Cetin, Sirin Cetin, Meryem Sivgin, Hakan Li, Wentian |
author_facet | Ulgen, Ayse Cetin, Sirin Cetin, Meryem Sivgin, Hakan Li, Wentian |
author_sort | Ulgen, Ayse |
collection | PubMed |
description | Having a complete and reliable list of risk factors from routine laboratory blood test for COVID-19 disease severity and mortality is important for patient care and hospital management. It is common to use meta-analysis to combine analysis results from different studies to make it more reproducible. In this paper, we propose to run multiple analyses on the same set of data to produce a more robust list of risk factors. With our time-to-event survival data, the standard survival analysis were extended in three directions. The first is to extend from tests and corresponding p-values to machine learning and their prediction performance. The second is to extend from single-variable to multiple-variable analysis. The third is to expand from analyzing time-to-decease data with death as the event of interest to analyzing time-to-hospital-release data to treat early recovery as a meaningful event as well. Our extension of the type of analyses leads to ten ranking lists. We conclude that 20 out of 30 factors are deemed to be reliably associated to faster-death or faster-recovery. Considering correlation among factors and evidenced by stepwise variable selection in random survival forest, 10 ~ 15 factors seem to be able to achieve the optimal prognosis performance. Our final list of risk factors contain calcium, white blood cell and neutrophils count, urea and creatine, d-dimer, red cell distribution widths, age, ferritin, glucose, lactate dehydrogenase, lymphocyte, basophils, anemia related factors (hemoglobin, hematocrit, mean corpuscular hemoglobin concentration), sodium, potassium, eosinophils, and aspartate aminotransferase. |
format | Online Article Text |
id | pubmed-8993420 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Elsevier Ltd. |
record_format | MEDLINE/PubMed |
spelling | pubmed-89934202022-04-11 A composite ranking of risk factors for COVID-19 time-to-event data from a Turkish cohort Ulgen, Ayse Cetin, Sirin Cetin, Meryem Sivgin, Hakan Li, Wentian Comput Biol Chem Article Having a complete and reliable list of risk factors from routine laboratory blood test for COVID-19 disease severity and mortality is important for patient care and hospital management. It is common to use meta-analysis to combine analysis results from different studies to make it more reproducible. In this paper, we propose to run multiple analyses on the same set of data to produce a more robust list of risk factors. With our time-to-event survival data, the standard survival analysis were extended in three directions. The first is to extend from tests and corresponding p-values to machine learning and their prediction performance. The second is to extend from single-variable to multiple-variable analysis. The third is to expand from analyzing time-to-decease data with death as the event of interest to analyzing time-to-hospital-release data to treat early recovery as a meaningful event as well. Our extension of the type of analyses leads to ten ranking lists. We conclude that 20 out of 30 factors are deemed to be reliably associated to faster-death or faster-recovery. Considering correlation among factors and evidenced by stepwise variable selection in random survival forest, 10 ~ 15 factors seem to be able to achieve the optimal prognosis performance. Our final list of risk factors contain calcium, white blood cell and neutrophils count, urea and creatine, d-dimer, red cell distribution widths, age, ferritin, glucose, lactate dehydrogenase, lymphocyte, basophils, anemia related factors (hemoglobin, hematocrit, mean corpuscular hemoglobin concentration), sodium, potassium, eosinophils, and aspartate aminotransferase. Elsevier Ltd. 2022-06 2022-04-09 /pmc/articles/PMC8993420/ /pubmed/35487152 http://dx.doi.org/10.1016/j.compbiolchem.2022.107681 Text en © 2022 Elsevier Ltd. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active. |
spellingShingle | Article Ulgen, Ayse Cetin, Sirin Cetin, Meryem Sivgin, Hakan Li, Wentian A composite ranking of risk factors for COVID-19 time-to-event data from a Turkish cohort |
title | A composite ranking of risk factors for COVID-19 time-to-event data from a Turkish cohort |
title_full | A composite ranking of risk factors for COVID-19 time-to-event data from a Turkish cohort |
title_fullStr | A composite ranking of risk factors for COVID-19 time-to-event data from a Turkish cohort |
title_full_unstemmed | A composite ranking of risk factors for COVID-19 time-to-event data from a Turkish cohort |
title_short | A composite ranking of risk factors for COVID-19 time-to-event data from a Turkish cohort |
title_sort | composite ranking of risk factors for covid-19 time-to-event data from a turkish cohort |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8993420/ https://www.ncbi.nlm.nih.gov/pubmed/35487152 http://dx.doi.org/10.1016/j.compbiolchem.2022.107681 |
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