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Comparative genome analysis of the first Listeria monocytogenes core genome multi-locus sequence types CT2050 AND CT2051 strains with their close relatives
Genome sequences of the three strains of L. monocytogenes, which are the first core genome multi-locus sequence types (cgMLST) 2050 and 2051 were reviewed and compared with 21 close relatives and reference genomes. Using a pan-genomic approach to analyse whole genome sequences, it was found that the...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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AIMS Press
2022
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8995181/ https://www.ncbi.nlm.nih.gov/pubmed/35496987 http://dx.doi.org/10.3934/microbiol.2022006 |
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author | Nwaiwu, Ogueri |
author_facet | Nwaiwu, Ogueri |
author_sort | Nwaiwu, Ogueri |
collection | PubMed |
description | Genome sequences of the three strains of L. monocytogenes, which are the first core genome multi-locus sequence types (cgMLST) 2050 and 2051 were reviewed and compared with 21 close relatives and reference genomes. Using a pan-genomic approach to analyse whole genome sequences, it was found that the strains consisted of approximately 2200 shared genes and a much greater pool of genes present as an accessory genome. An unknown transmissible sequence of approximately 91 kb harbouring bacitracin resistance genes found in strain LmNG2 (1/2b) was revealed to be an Inc18 plasmid. The CT2051, strain LmNG3 (1/2a) haboured more unique genes (252 vs 230) than the well-known reference strain LmEGD-e (1/2a). More studies to monitor new strains can help reduce food-borne outbreaks. |
format | Online Article Text |
id | pubmed-8995181 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | AIMS Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-89951812022-04-27 Comparative genome analysis of the first Listeria monocytogenes core genome multi-locus sequence types CT2050 AND CT2051 strains with their close relatives Nwaiwu, Ogueri AIMS Microbiol Mini Review Genome sequences of the three strains of L. monocytogenes, which are the first core genome multi-locus sequence types (cgMLST) 2050 and 2051 were reviewed and compared with 21 close relatives and reference genomes. Using a pan-genomic approach to analyse whole genome sequences, it was found that the strains consisted of approximately 2200 shared genes and a much greater pool of genes present as an accessory genome. An unknown transmissible sequence of approximately 91 kb harbouring bacitracin resistance genes found in strain LmNG2 (1/2b) was revealed to be an Inc18 plasmid. The CT2051, strain LmNG3 (1/2a) haboured more unique genes (252 vs 230) than the well-known reference strain LmEGD-e (1/2a). More studies to monitor new strains can help reduce food-borne outbreaks. AIMS Press 2022-03-21 /pmc/articles/PMC8995181/ /pubmed/35496987 http://dx.doi.org/10.3934/microbiol.2022006 Text en © 2022 the Author(s), licensee AIMS Press https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0 (https://creativecommons.org/licenses/by/4.0/) ) |
spellingShingle | Mini Review Nwaiwu, Ogueri Comparative genome analysis of the first Listeria monocytogenes core genome multi-locus sequence types CT2050 AND CT2051 strains with their close relatives |
title | Comparative genome analysis of the first Listeria monocytogenes core genome multi-locus sequence types CT2050 AND CT2051 strains with their close relatives |
title_full | Comparative genome analysis of the first Listeria monocytogenes core genome multi-locus sequence types CT2050 AND CT2051 strains with their close relatives |
title_fullStr | Comparative genome analysis of the first Listeria monocytogenes core genome multi-locus sequence types CT2050 AND CT2051 strains with their close relatives |
title_full_unstemmed | Comparative genome analysis of the first Listeria monocytogenes core genome multi-locus sequence types CT2050 AND CT2051 strains with their close relatives |
title_short | Comparative genome analysis of the first Listeria monocytogenes core genome multi-locus sequence types CT2050 AND CT2051 strains with their close relatives |
title_sort | comparative genome analysis of the first listeria monocytogenes core genome multi-locus sequence types ct2050 and ct2051 strains with their close relatives |
topic | Mini Review |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8995181/ https://www.ncbi.nlm.nih.gov/pubmed/35496987 http://dx.doi.org/10.3934/microbiol.2022006 |
work_keys_str_mv | AT nwaiwuogueri comparativegenomeanalysisofthefirstlisteriamonocytogenescoregenomemultilocussequencetypesct2050andct2051strainswiththeircloserelatives |