Cargando…

Investigating the Prognostic Significance of Pyroptosis-Related Genes in Gastric Cancer and Their Impact on Cells’ Biological Functions

OBJECTIVE: To probe into the role of pyroptosis-related genes in gastric cancer. METHODS: To establish pyroptosis-related genes, observe their expression in gastric cancer, and analyze the prognosis of pyroptosis-related genes in gastric cancer by single-factor COX, which showed that only GSDME had...

Descripción completa

Detalles Bibliográficos
Autores principales: Yin, Jie, Che, Gang, Wang, Wankun, Chen, Shitu, Liu, Jian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8995648/
https://www.ncbi.nlm.nih.gov/pubmed/35419279
http://dx.doi.org/10.3389/fonc.2022.861284
_version_ 1784684332544163840
author Yin, Jie
Che, Gang
Wang, Wankun
Chen, Shitu
Liu, Jian
author_facet Yin, Jie
Che, Gang
Wang, Wankun
Chen, Shitu
Liu, Jian
author_sort Yin, Jie
collection PubMed
description OBJECTIVE: To probe into the role of pyroptosis-related genes in gastric cancer. METHODS: To establish pyroptosis-related genes, observe their expression in gastric cancer, and analyze the prognosis of pyroptosis-related genes in gastric cancer by single-factor COX, which showed that only GSDME had prognostic significance in gastric cancer. The mRNA expression profiles and lncRNA expression profiles of gastric cancer downloaded from the Cancer Genome Atlas were combined for weighted gene regulatory network analysis, after which the lncRNA nodes of the module to which GSDME belongs were extracted to obtain the lncRNAs−GSDME interactions, which were visualized with Cytoscape network plots. Finally, the effects of GSDME on the proliferation, migration, and apoptosis of gastric cancer cells were observed with CCK8, and flow cytometry. RESULTS: Our results show that only GSDME has prognostic significance in gastric cancer, and show that it has an important role in a variety of tumors. In addition, our results show that 16 lncRNAs have a significant interaction with GSDME. Finally, the experimental analysis showed that knocking down the expression level of GSDME could affect the growth as well as apoptosis of gastric cancer cells. CONCLUSION: The significant prognostic significance of GSDME in gastric cancer and the fact that affecting GSDME expression inhibits gastric cancer cell growth suggest that GSDME can be used as a predictive biomarker.
format Online
Article
Text
id pubmed-8995648
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-89956482022-04-12 Investigating the Prognostic Significance of Pyroptosis-Related Genes in Gastric Cancer and Their Impact on Cells’ Biological Functions Yin, Jie Che, Gang Wang, Wankun Chen, Shitu Liu, Jian Front Oncol Oncology OBJECTIVE: To probe into the role of pyroptosis-related genes in gastric cancer. METHODS: To establish pyroptosis-related genes, observe their expression in gastric cancer, and analyze the prognosis of pyroptosis-related genes in gastric cancer by single-factor COX, which showed that only GSDME had prognostic significance in gastric cancer. The mRNA expression profiles and lncRNA expression profiles of gastric cancer downloaded from the Cancer Genome Atlas were combined for weighted gene regulatory network analysis, after which the lncRNA nodes of the module to which GSDME belongs were extracted to obtain the lncRNAs−GSDME interactions, which were visualized with Cytoscape network plots. Finally, the effects of GSDME on the proliferation, migration, and apoptosis of gastric cancer cells were observed with CCK8, and flow cytometry. RESULTS: Our results show that only GSDME has prognostic significance in gastric cancer, and show that it has an important role in a variety of tumors. In addition, our results show that 16 lncRNAs have a significant interaction with GSDME. Finally, the experimental analysis showed that knocking down the expression level of GSDME could affect the growth as well as apoptosis of gastric cancer cells. CONCLUSION: The significant prognostic significance of GSDME in gastric cancer and the fact that affecting GSDME expression inhibits gastric cancer cell growth suggest that GSDME can be used as a predictive biomarker. Frontiers Media S.A. 2022-03-28 /pmc/articles/PMC8995648/ /pubmed/35419279 http://dx.doi.org/10.3389/fonc.2022.861284 Text en Copyright © 2022 Yin, Che, Wang, Chen and Liu https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Oncology
Yin, Jie
Che, Gang
Wang, Wankun
Chen, Shitu
Liu, Jian
Investigating the Prognostic Significance of Pyroptosis-Related Genes in Gastric Cancer and Their Impact on Cells’ Biological Functions
title Investigating the Prognostic Significance of Pyroptosis-Related Genes in Gastric Cancer and Their Impact on Cells’ Biological Functions
title_full Investigating the Prognostic Significance of Pyroptosis-Related Genes in Gastric Cancer and Their Impact on Cells’ Biological Functions
title_fullStr Investigating the Prognostic Significance of Pyroptosis-Related Genes in Gastric Cancer and Their Impact on Cells’ Biological Functions
title_full_unstemmed Investigating the Prognostic Significance of Pyroptosis-Related Genes in Gastric Cancer and Their Impact on Cells’ Biological Functions
title_short Investigating the Prognostic Significance of Pyroptosis-Related Genes in Gastric Cancer and Their Impact on Cells’ Biological Functions
title_sort investigating the prognostic significance of pyroptosis-related genes in gastric cancer and their impact on cells’ biological functions
topic Oncology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8995648/
https://www.ncbi.nlm.nih.gov/pubmed/35419279
http://dx.doi.org/10.3389/fonc.2022.861284
work_keys_str_mv AT yinjie investigatingtheprognosticsignificanceofpyroptosisrelatedgenesingastriccancerandtheirimpactoncellsbiologicalfunctions
AT chegang investigatingtheprognosticsignificanceofpyroptosisrelatedgenesingastriccancerandtheirimpactoncellsbiologicalfunctions
AT wangwankun investigatingtheprognosticsignificanceofpyroptosisrelatedgenesingastriccancerandtheirimpactoncellsbiologicalfunctions
AT chenshitu investigatingtheprognosticsignificanceofpyroptosisrelatedgenesingastriccancerandtheirimpactoncellsbiologicalfunctions
AT liujian investigatingtheprognosticsignificanceofpyroptosisrelatedgenesingastriccancerandtheirimpactoncellsbiologicalfunctions