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Distinct diagnostic trajectories in NBAS‐associated acute liver failure highlights the need for timely functional studies

Variants of uncertain significance (VUS) are commonly found following genomic sequencing, particularly in ethnically diverse populations that are underrepresented in large population databases. Functional characterization of VUS may assist in variant reclassification, however these studies are not r...

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Autores principales: Akesson, Lauren S., Rius, Rocio, Brown, Natasha J., Rosenbaum, Jeremy, Donoghue, Sarah, Stormon, Michael, Chai, Charmaine, Bordador, Esmeralda, Guo, Yiran, Hakonarson, Hakon, Compton, Alison G., Thorburn, David R., Amarasekera, Sumudu, Marum, Justine, Monaco, Alisha, Lee, Crystle, Chong, Belinda, Lunke, Sebastian, Stark, Zornitza, Christodoulou, John
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley & Sons, Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8995841/
https://www.ncbi.nlm.nih.gov/pubmed/35433172
http://dx.doi.org/10.1002/jmd2.12280
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author Akesson, Lauren S.
Rius, Rocio
Brown, Natasha J.
Rosenbaum, Jeremy
Donoghue, Sarah
Stormon, Michael
Chai, Charmaine
Bordador, Esmeralda
Guo, Yiran
Hakonarson, Hakon
Compton, Alison G.
Thorburn, David R.
Amarasekera, Sumudu
Marum, Justine
Monaco, Alisha
Lee, Crystle
Chong, Belinda
Lunke, Sebastian
Stark, Zornitza
Christodoulou, John
author_facet Akesson, Lauren S.
Rius, Rocio
Brown, Natasha J.
Rosenbaum, Jeremy
Donoghue, Sarah
Stormon, Michael
Chai, Charmaine
Bordador, Esmeralda
Guo, Yiran
Hakonarson, Hakon
Compton, Alison G.
Thorburn, David R.
Amarasekera, Sumudu
Marum, Justine
Monaco, Alisha
Lee, Crystle
Chong, Belinda
Lunke, Sebastian
Stark, Zornitza
Christodoulou, John
author_sort Akesson, Lauren S.
collection PubMed
description Variants of uncertain significance (VUS) are commonly found following genomic sequencing, particularly in ethnically diverse populations that are underrepresented in large population databases. Functional characterization of VUS may assist in variant reclassification, however these studies are not readily available and often rely on research funding and good will. We present four individuals from three families at different stages of their diagnostic trajectory with recurrent acute liver failure (RALF) and biallelic NBAS variants, confirmed by either trio analysis or cDNA studies. Functional characterization was undertaken, measuring NBAS and p31 levels by Western blotting, demonstrating reduced NBAS levels in two of three families, and reduced p31 levels in all three families. These results provided functional characterization of the molecular impact of a missense VUS, allowing reclassification of the variant and molecular confirmation of NBAS‐associated RALF. Importantly, p31 was decreased in all individuals, including an individual with two missense variants where NBAS protein levels were preserved. These results highlight the importance of access to timely functional studies after identification of putative variants, and the importance of considering a range of assays to validate variants whose pathogenicity is uncertain. We suggest that funding models for genomic sequencing should consider incorporating capabilities for adjunct RNA, protein, biochemical, and other specialized tests to increase the diagnostic yield which will lead to improved medical care, increased equity, and access to molecular diagnoses for all patients.
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spelling pubmed-89958412022-04-15 Distinct diagnostic trajectories in NBAS‐associated acute liver failure highlights the need for timely functional studies Akesson, Lauren S. Rius, Rocio Brown, Natasha J. Rosenbaum, Jeremy Donoghue, Sarah Stormon, Michael Chai, Charmaine Bordador, Esmeralda Guo, Yiran Hakonarson, Hakon Compton, Alison G. Thorburn, David R. Amarasekera, Sumudu Marum, Justine Monaco, Alisha Lee, Crystle Chong, Belinda Lunke, Sebastian Stark, Zornitza Christodoulou, John JIMD Rep Research Reports Variants of uncertain significance (VUS) are commonly found following genomic sequencing, particularly in ethnically diverse populations that are underrepresented in large population databases. Functional characterization of VUS may assist in variant reclassification, however these studies are not readily available and often rely on research funding and good will. We present four individuals from three families at different stages of their diagnostic trajectory with recurrent acute liver failure (RALF) and biallelic NBAS variants, confirmed by either trio analysis or cDNA studies. Functional characterization was undertaken, measuring NBAS and p31 levels by Western blotting, demonstrating reduced NBAS levels in two of three families, and reduced p31 levels in all three families. These results provided functional characterization of the molecular impact of a missense VUS, allowing reclassification of the variant and molecular confirmation of NBAS‐associated RALF. Importantly, p31 was decreased in all individuals, including an individual with two missense variants where NBAS protein levels were preserved. These results highlight the importance of access to timely functional studies after identification of putative variants, and the importance of considering a range of assays to validate variants whose pathogenicity is uncertain. We suggest that funding models for genomic sequencing should consider incorporating capabilities for adjunct RNA, protein, biochemical, and other specialized tests to increase the diagnostic yield which will lead to improved medical care, increased equity, and access to molecular diagnoses for all patients. John Wiley & Sons, Inc. 2022-03-15 /pmc/articles/PMC8995841/ /pubmed/35433172 http://dx.doi.org/10.1002/jmd2.12280 Text en © 2022 The Authors. JIMD Reports published by John Wiley & Sons Ltd on behalf of SSIEM. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Reports
Akesson, Lauren S.
Rius, Rocio
Brown, Natasha J.
Rosenbaum, Jeremy
Donoghue, Sarah
Stormon, Michael
Chai, Charmaine
Bordador, Esmeralda
Guo, Yiran
Hakonarson, Hakon
Compton, Alison G.
Thorburn, David R.
Amarasekera, Sumudu
Marum, Justine
Monaco, Alisha
Lee, Crystle
Chong, Belinda
Lunke, Sebastian
Stark, Zornitza
Christodoulou, John
Distinct diagnostic trajectories in NBAS‐associated acute liver failure highlights the need for timely functional studies
title Distinct diagnostic trajectories in NBAS‐associated acute liver failure highlights the need for timely functional studies
title_full Distinct diagnostic trajectories in NBAS‐associated acute liver failure highlights the need for timely functional studies
title_fullStr Distinct diagnostic trajectories in NBAS‐associated acute liver failure highlights the need for timely functional studies
title_full_unstemmed Distinct diagnostic trajectories in NBAS‐associated acute liver failure highlights the need for timely functional studies
title_short Distinct diagnostic trajectories in NBAS‐associated acute liver failure highlights the need for timely functional studies
title_sort distinct diagnostic trajectories in nbas‐associated acute liver failure highlights the need for timely functional studies
topic Research Reports
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8995841/
https://www.ncbi.nlm.nih.gov/pubmed/35433172
http://dx.doi.org/10.1002/jmd2.12280
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