Cargando…

In silico ADMET, molecular docking and molecular simulation-based study of glabridin’s natural and semisynthetic derivatives as potential tyrosinase inhibitors

Hyper-pigmentation conditions may develop due to erroneous melanogenesis cascade which leads to excess melanin production. Recently, inhibition of tyrosinase is the main focus of investigation as it majorly contributes to melanin production. This inhibition property can be exploited in medicine, agr...

Descripción completa

Detalles Bibliográficos
Autores principales: Kumari, Arti, kumar, Rakesh, Sulabh, Gira, Singh, Pratishtha, Kumar, Jainendra, Singh, Vijay Kumar, Ojha, Krishna Kumar
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Singapore 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9000003/
http://dx.doi.org/10.1007/s13596-022-00640-8
_version_ 1784685326788198400
author Kumari, Arti
kumar, Rakesh
Sulabh, Gira
Singh, Pratishtha
Kumar, Jainendra
Singh, Vijay Kumar
Ojha, Krishna Kumar
author_facet Kumari, Arti
kumar, Rakesh
Sulabh, Gira
Singh, Pratishtha
Kumar, Jainendra
Singh, Vijay Kumar
Ojha, Krishna Kumar
author_sort Kumari, Arti
collection PubMed
description Hyper-pigmentation conditions may develop due to erroneous melanogenesis cascade which leads to excess melanin production. Recently, inhibition of tyrosinase is the main focus of investigation as it majorly contributes to melanin production. This inhibition property can be exploited in medicine, agriculture, and in cosmetics. Present study aims to find a natural and safe alternative molecule as tyrosinase inhibitor. In this study, human tyrosinase enzyme was modelled due to unavailability of its crystal structure to look into the degree of efficacy of glabridin and its 15 derivatives as tyrosinase inhibitor. Docking was performed by Autodock Vina at the catalytic core enzyme. Glabridin effects on melanoma cell lines was also elucidated by analysing cytotoxicity and effect on melanin production. Computational ADME analysis was done by SwissADME. Molecular dynamic simulation was also performed to further evaluate the interaction profile of these molecules and kojic acid (positive inhibitor) with respect to apo protein. Notably, four derivatives 5′-formylglabridin, glabridin dimer, 5′-prenyl glabridin and R-glabridin exhibited better binding affinity than glabridin. Glabridin effectively inhibited melanin production in a dose dependent manner. Among these, 5′-formylglabridin displayed highest binding affinity with docking score − 9.2 kcal/mol. Molecular properties and bioactivity analysis by Molinspiration web server and by SwissADME also presented these molecules as potential drug candidates. The study explores the understanding for the development of suitable tyrosinase inhibitor/s for the prevention of hyperpigmentation. However, a detailed in vivo study is required for glabridin derivatives to suggest these molecules as anti-melanogenic compound. GRAPHICAL ABSTRACT: [Image: see text] SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s13596-022-00640-8.
format Online
Article
Text
id pubmed-9000003
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Springer Singapore
record_format MEDLINE/PubMed
spelling pubmed-90000032022-04-12 In silico ADMET, molecular docking and molecular simulation-based study of glabridin’s natural and semisynthetic derivatives as potential tyrosinase inhibitors Kumari, Arti kumar, Rakesh Sulabh, Gira Singh, Pratishtha Kumar, Jainendra Singh, Vijay Kumar Ojha, Krishna Kumar ADV TRADIT MED (ADTM) Research Article Hyper-pigmentation conditions may develop due to erroneous melanogenesis cascade which leads to excess melanin production. Recently, inhibition of tyrosinase is the main focus of investigation as it majorly contributes to melanin production. This inhibition property can be exploited in medicine, agriculture, and in cosmetics. Present study aims to find a natural and safe alternative molecule as tyrosinase inhibitor. In this study, human tyrosinase enzyme was modelled due to unavailability of its crystal structure to look into the degree of efficacy of glabridin and its 15 derivatives as tyrosinase inhibitor. Docking was performed by Autodock Vina at the catalytic core enzyme. Glabridin effects on melanoma cell lines was also elucidated by analysing cytotoxicity and effect on melanin production. Computational ADME analysis was done by SwissADME. Molecular dynamic simulation was also performed to further evaluate the interaction profile of these molecules and kojic acid (positive inhibitor) with respect to apo protein. Notably, four derivatives 5′-formylglabridin, glabridin dimer, 5′-prenyl glabridin and R-glabridin exhibited better binding affinity than glabridin. Glabridin effectively inhibited melanin production in a dose dependent manner. Among these, 5′-formylglabridin displayed highest binding affinity with docking score − 9.2 kcal/mol. Molecular properties and bioactivity analysis by Molinspiration web server and by SwissADME also presented these molecules as potential drug candidates. The study explores the understanding for the development of suitable tyrosinase inhibitor/s for the prevention of hyperpigmentation. However, a detailed in vivo study is required for glabridin derivatives to suggest these molecules as anti-melanogenic compound. GRAPHICAL ABSTRACT: [Image: see text] SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s13596-022-00640-8. Springer Singapore 2022-04-11 /pmc/articles/PMC9000003/ http://dx.doi.org/10.1007/s13596-022-00640-8 Text en © The Author(s), under exclusive licence to Institute of Korean Medicine, Kyung Hee University 2022 This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.
spellingShingle Research Article
Kumari, Arti
kumar, Rakesh
Sulabh, Gira
Singh, Pratishtha
Kumar, Jainendra
Singh, Vijay Kumar
Ojha, Krishna Kumar
In silico ADMET, molecular docking and molecular simulation-based study of glabridin’s natural and semisynthetic derivatives as potential tyrosinase inhibitors
title In silico ADMET, molecular docking and molecular simulation-based study of glabridin’s natural and semisynthetic derivatives as potential tyrosinase inhibitors
title_full In silico ADMET, molecular docking and molecular simulation-based study of glabridin’s natural and semisynthetic derivatives as potential tyrosinase inhibitors
title_fullStr In silico ADMET, molecular docking and molecular simulation-based study of glabridin’s natural and semisynthetic derivatives as potential tyrosinase inhibitors
title_full_unstemmed In silico ADMET, molecular docking and molecular simulation-based study of glabridin’s natural and semisynthetic derivatives as potential tyrosinase inhibitors
title_short In silico ADMET, molecular docking and molecular simulation-based study of glabridin’s natural and semisynthetic derivatives as potential tyrosinase inhibitors
title_sort in silico admet, molecular docking and molecular simulation-based study of glabridin’s natural and semisynthetic derivatives as potential tyrosinase inhibitors
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9000003/
http://dx.doi.org/10.1007/s13596-022-00640-8
work_keys_str_mv AT kumariarti insilicoadmetmoleculardockingandmolecularsimulationbasedstudyofglabridinsnaturalandsemisyntheticderivativesaspotentialtyrosinaseinhibitors
AT kumarrakesh insilicoadmetmoleculardockingandmolecularsimulationbasedstudyofglabridinsnaturalandsemisyntheticderivativesaspotentialtyrosinaseinhibitors
AT sulabhgira insilicoadmetmoleculardockingandmolecularsimulationbasedstudyofglabridinsnaturalandsemisyntheticderivativesaspotentialtyrosinaseinhibitors
AT singhpratishtha insilicoadmetmoleculardockingandmolecularsimulationbasedstudyofglabridinsnaturalandsemisyntheticderivativesaspotentialtyrosinaseinhibitors
AT kumarjainendra insilicoadmetmoleculardockingandmolecularsimulationbasedstudyofglabridinsnaturalandsemisyntheticderivativesaspotentialtyrosinaseinhibitors
AT singhvijaykumar insilicoadmetmoleculardockingandmolecularsimulationbasedstudyofglabridinsnaturalandsemisyntheticderivativesaspotentialtyrosinaseinhibitors
AT ojhakrishnakumar insilicoadmetmoleculardockingandmolecularsimulationbasedstudyofglabridinsnaturalandsemisyntheticderivativesaspotentialtyrosinaseinhibitors