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Shape shifting: The multiple conformational substates of the PTEN N‐terminal PIP(2) ‐binding domain

The Phosphatase and TENsin homolog deleted on chromosome 10 (PTEN) is a chief regulator of a variety of cellular processes including cell proliferation, migration, growth, and death. It is also a major tumor suppressor gene that is frequently mutated or lost under cancerous conditions. PTEN encodes...

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Autores principales: Dawson, Jennifer E., Smith, Iris Nira, Martin, William, Khan, Krishnendu, Cheng, Feixiong, Eng, Charis
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley & Sons, Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9004235/
https://www.ncbi.nlm.nih.gov/pubmed/35481646
http://dx.doi.org/10.1002/pro.4308
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author Dawson, Jennifer E.
Smith, Iris Nira
Martin, William
Khan, Krishnendu
Cheng, Feixiong
Eng, Charis
author_facet Dawson, Jennifer E.
Smith, Iris Nira
Martin, William
Khan, Krishnendu
Cheng, Feixiong
Eng, Charis
author_sort Dawson, Jennifer E.
collection PubMed
description The Phosphatase and TENsin homolog deleted on chromosome 10 (PTEN) is a chief regulator of a variety of cellular processes including cell proliferation, migration, growth, and death. It is also a major tumor suppressor gene that is frequently mutated or lost under cancerous conditions. PTEN encodes a dual‐specificity (lipid and protein) phosphatase that negatively regulates the PI3K/AKT/mTOR signaling pathway where the PIP(2)‐binding domain (PBD) regulates the lipid phosphatase function. Unfortunately, despite two decades of research, a full‐length structure of PTEN remains elusive, leaving open questions regarding PTEN's disordered regions that mediate protein stability, post‐translational modifications, protein–protein interactions, while also hindering the design of small molecules that can regulate PTEN's function. Here, we utilized a combination of crosslinking mass spectrometry, in silico predicted structural modeling (including AlphaFold2), molecular docking, molecular dynamics simulations, and residue interaction network modeling to obtain structural details and molecular insight into the behavior of the PBD of PTEN. Our study shows that the PBD exists in multiple conformations which suggests its ability to regulate PTEN's variety of functions. Studying how these specific conformational substates contribute to PTEN function is imperative to defining its function in disease pathogenesis, and to delineate ways to modulate its tumor suppressor activity.
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spelling pubmed-90042352022-04-15 Shape shifting: The multiple conformational substates of the PTEN N‐terminal PIP(2) ‐binding domain Dawson, Jennifer E. Smith, Iris Nira Martin, William Khan, Krishnendu Cheng, Feixiong Eng, Charis Protein Sci Accelerated Communications The Phosphatase and TENsin homolog deleted on chromosome 10 (PTEN) is a chief regulator of a variety of cellular processes including cell proliferation, migration, growth, and death. It is also a major tumor suppressor gene that is frequently mutated or lost under cancerous conditions. PTEN encodes a dual‐specificity (lipid and protein) phosphatase that negatively regulates the PI3K/AKT/mTOR signaling pathway where the PIP(2)‐binding domain (PBD) regulates the lipid phosphatase function. Unfortunately, despite two decades of research, a full‐length structure of PTEN remains elusive, leaving open questions regarding PTEN's disordered regions that mediate protein stability, post‐translational modifications, protein–protein interactions, while also hindering the design of small molecules that can regulate PTEN's function. Here, we utilized a combination of crosslinking mass spectrometry, in silico predicted structural modeling (including AlphaFold2), molecular docking, molecular dynamics simulations, and residue interaction network modeling to obtain structural details and molecular insight into the behavior of the PBD of PTEN. Our study shows that the PBD exists in multiple conformations which suggests its ability to regulate PTEN's variety of functions. Studying how these specific conformational substates contribute to PTEN function is imperative to defining its function in disease pathogenesis, and to delineate ways to modulate its tumor suppressor activity. John Wiley & Sons, Inc. 2022-04-12 2022-05 /pmc/articles/PMC9004235/ /pubmed/35481646 http://dx.doi.org/10.1002/pro.4308 Text en © 2022 The Authors. Protein Science published by Wiley Periodicals LLC on behalf of The Protein Society. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ (https://creativecommons.org/licenses/by-nc-nd/4.0/) License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.
spellingShingle Accelerated Communications
Dawson, Jennifer E.
Smith, Iris Nira
Martin, William
Khan, Krishnendu
Cheng, Feixiong
Eng, Charis
Shape shifting: The multiple conformational substates of the PTEN N‐terminal PIP(2) ‐binding domain
title Shape shifting: The multiple conformational substates of the PTEN N‐terminal PIP(2) ‐binding domain
title_full Shape shifting: The multiple conformational substates of the PTEN N‐terminal PIP(2) ‐binding domain
title_fullStr Shape shifting: The multiple conformational substates of the PTEN N‐terminal PIP(2) ‐binding domain
title_full_unstemmed Shape shifting: The multiple conformational substates of the PTEN N‐terminal PIP(2) ‐binding domain
title_short Shape shifting: The multiple conformational substates of the PTEN N‐terminal PIP(2) ‐binding domain
title_sort shape shifting: the multiple conformational substates of the pten n‐terminal pip(2) ‐binding domain
topic Accelerated Communications
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9004235/
https://www.ncbi.nlm.nih.gov/pubmed/35481646
http://dx.doi.org/10.1002/pro.4308
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