Integrated Genome Browser App Store

SUMMARY: Rapid progress in genome science requires equally rapid visualization software development so that researchers can better explore and understand novel datasets. To make developing new visualizations faster and easier, we previously re-factored the Integrated Genome Browser (IGB), a desktop...

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Autores principales: Shanbhag, Sameer, Patil, Riddhi, Zahara, Noor, Shetty, Chirag, Weidenhammer, Rachel, Watharkar, Sneha, Tambvekar, Pranav, Badzuh, Philip P, Dias, Chester, Vankayala, Narendra, Kulkarni, Prutha, Vallapureddy, Charan, Kulkarni, Shamika, Nikhare, Pooja, Freese, Nowlan H, Loraine, Ann E
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2022
Materias:
Applications Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9004644/
https://www.ncbi.nlm.nih.gov/pubmed/35179566
http://dx.doi.org/10.1093/bioinformatics/btac109
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author Shanbhag, Sameer
Patil, Riddhi
Zahara, Noor
Shetty, Chirag
Weidenhammer, Rachel
Watharkar, Sneha
Tambvekar, Pranav
Badzuh, Philip P
Dias, Chester
Vankayala, Narendra
Kulkarni, Prutha
Vallapureddy, Charan
Kulkarni, Shamika
Nikhare, Pooja
Freese, Nowlan H
Loraine, Ann E
author_facet Shanbhag, Sameer
Patil, Riddhi
Zahara, Noor
Shetty, Chirag
Weidenhammer, Rachel
Watharkar, Sneha
Tambvekar, Pranav
Badzuh, Philip P
Dias, Chester
Vankayala, Narendra
Kulkarni, Prutha
Vallapureddy, Charan
Kulkarni, Shamika
Nikhare, Pooja
Freese, Nowlan H
Loraine, Ann E
author_sort Shanbhag, Sameer
collection PubMed
description SUMMARY: Rapid progress in genome science requires equally rapid visualization software development so that researchers can better explore and understand novel datasets. To make developing new visualizations faster and easier, we previously re-factored the Integrated Genome Browser (IGB), a desktop Java application with dozens of features, into a pluggable application framework that can accept new functionality as plug-ins, called IGB Apps. However, developers lacked a centralized location for sharing Apps, making it hard to connect with potential users. To fill this gap, we created an App Store for IGB, a user-friendly Web site for developers to release and document Apps, and for users to find them. AVAILABILITY AND IMPLEMENTATION: The IGB App Store is available from https://bioviz.org.
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spelling pubmed-90046442022-04-13 Integrated Genome Browser App Store Shanbhag, Sameer Patil, Riddhi Zahara, Noor Shetty, Chirag Weidenhammer, Rachel Watharkar, Sneha Tambvekar, Pranav Badzuh, Philip P Dias, Chester Vankayala, Narendra Kulkarni, Prutha Vallapureddy, Charan Kulkarni, Shamika Nikhare, Pooja Freese, Nowlan H Loraine, Ann E Bioinformatics Applications Note SUMMARY: Rapid progress in genome science requires equally rapid visualization software development so that researchers can better explore and understand novel datasets. To make developing new visualizations faster and easier, we previously re-factored the Integrated Genome Browser (IGB), a desktop Java application with dozens of features, into a pluggable application framework that can accept new functionality as plug-ins, called IGB Apps. However, developers lacked a centralized location for sharing Apps, making it hard to connect with potential users. To fill this gap, we created an App Store for IGB, a user-friendly Web site for developers to release and document Apps, and for users to find them. AVAILABILITY AND IMPLEMENTATION: The IGB App Store is available from https://bioviz.org. Oxford University Press 2022-02-18 /pmc/articles/PMC9004644/ /pubmed/35179566 http://dx.doi.org/10.1093/bioinformatics/btac109 Text en © The Author(s) 2022. Published by Oxford University Press. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Applications Note
Shanbhag, Sameer
Patil, Riddhi
Zahara, Noor
Shetty, Chirag
Weidenhammer, Rachel
Watharkar, Sneha
Tambvekar, Pranav
Badzuh, Philip P
Dias, Chester
Vankayala, Narendra
Kulkarni, Prutha
Vallapureddy, Charan
Kulkarni, Shamika
Nikhare, Pooja
Freese, Nowlan H
Loraine, Ann E
Integrated Genome Browser App Store
title Integrated Genome Browser App Store
title_full Integrated Genome Browser App Store
title_fullStr Integrated Genome Browser App Store
title_full_unstemmed Integrated Genome Browser App Store
title_short Integrated Genome Browser App Store
title_sort integrated genome browser app store
topic Applications Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9004644/
https://www.ncbi.nlm.nih.gov/pubmed/35179566
http://dx.doi.org/10.1093/bioinformatics/btac109
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