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Pladias platform: Technical description of the database structure

BACKGROUND: Digitising and aggregating local floristic data is a critical step in the study of biodiversity. The integrative web-based platform Pladias, designed to cover a wide range of data on vascular plants, was recently developed in the Czech Republic. The combination of occurrence data with sp...

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Autores principales: Novotný, Petr, Brůna, Josef, Chytrý, Milan, Kalčík, Vojtěch, Kaplan, Zdeněk, Kebert, Tomáš, Rohn, Martin, Řezníčková, Marcela, Štech, Milan, Wild, Jan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Pensoft Publishers 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9005464/
https://www.ncbi.nlm.nih.gov/pubmed/35437400
http://dx.doi.org/10.3897/BDJ.10.e80167
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author Novotný, Petr
Brůna, Josef
Chytrý, Milan
Kalčík, Vojtěch
Kaplan, Zdeněk
Kebert, Tomáš
Rohn, Martin
Řezníčková, Marcela
Štech, Milan
Wild, Jan
author_facet Novotný, Petr
Brůna, Josef
Chytrý, Milan
Kalčík, Vojtěch
Kaplan, Zdeněk
Kebert, Tomáš
Rohn, Martin
Řezníčková, Marcela
Štech, Milan
Wild, Jan
author_sort Novotný, Petr
collection PubMed
description BACKGROUND: Digitising and aggregating local floristic data is a critical step in the study of biodiversity. The integrative web-based platform Pladias, designed to cover a wide range of data on vascular plants, was recently developed in the Czech Republic. The combination of occurrence data with species characteristics opens many opportunities for data analysis and synthesis. NEW INFORMATION: This article describes the relational structure of the Pladias database service (PladiasDB) and the context of the platform architecture. The structure is relatively complex, as our goal was to cover: (i) species occurrence records, including their management, validation and export of revised species distribution maps, (ii) data on species characteristics with quality control tools using defined data types and (iii) separate user interfaces (UI) for professionals and the general public. We discuss the approaches chosen to model individual elements in PladiasDB and summarise the experience gained during the first five years of operation of the Pladias platform.
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spelling pubmed-90054642022-04-17 Pladias platform: Technical description of the database structure Novotný, Petr Brůna, Josef Chytrý, Milan Kalčík, Vojtěch Kaplan, Zdeněk Kebert, Tomáš Rohn, Martin Řezníčková, Marcela Štech, Milan Wild, Jan Biodivers Data J Software Description BACKGROUND: Digitising and aggregating local floristic data is a critical step in the study of biodiversity. The integrative web-based platform Pladias, designed to cover a wide range of data on vascular plants, was recently developed in the Czech Republic. The combination of occurrence data with species characteristics opens many opportunities for data analysis and synthesis. NEW INFORMATION: This article describes the relational structure of the Pladias database service (PladiasDB) and the context of the platform architecture. The structure is relatively complex, as our goal was to cover: (i) species occurrence records, including their management, validation and export of revised species distribution maps, (ii) data on species characteristics with quality control tools using defined data types and (iii) separate user interfaces (UI) for professionals and the general public. We discuss the approaches chosen to model individual elements in PladiasDB and summarise the experience gained during the first five years of operation of the Pladias platform. Pensoft Publishers 2022-04-01 /pmc/articles/PMC9005464/ /pubmed/35437400 http://dx.doi.org/10.3897/BDJ.10.e80167 Text en Petr Novotný, Josef Brůna, Milan Chytrý, Vojtěch Kalčík, Zdeněk Kaplan, Tomáš Kebert, Martin Rohn, Marcela Řezníčková, Milan Štech, Jan Wild https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Software Description
Novotný, Petr
Brůna, Josef
Chytrý, Milan
Kalčík, Vojtěch
Kaplan, Zdeněk
Kebert, Tomáš
Rohn, Martin
Řezníčková, Marcela
Štech, Milan
Wild, Jan
Pladias platform: Technical description of the database structure
title Pladias platform: Technical description of the database structure
title_full Pladias platform: Technical description of the database structure
title_fullStr Pladias platform: Technical description of the database structure
title_full_unstemmed Pladias platform: Technical description of the database structure
title_short Pladias platform: Technical description of the database structure
title_sort pladias platform: technical description of the database structure
topic Software Description
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9005464/
https://www.ncbi.nlm.nih.gov/pubmed/35437400
http://dx.doi.org/10.3897/BDJ.10.e80167
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