Cargando…

Prediction of Survival Rate and Chemotherapy Effect by an Immune Score Model in Colorectal Cancer

Colorectal cancer is the third most common cancer and the second leading cause of cancer-related deaths. Immune cells in the tumor microenvironment play an important role in the development of tumors. In this study, CIBERSORT was used to estimate the subset of the immune cells using bulk gene expres...

Descripción completa

Detalles Bibliográficos
Autores principales: Liu, Siyao, Wang, Zhengjian, Ntim, Michael, Han, Jingrun, Jiang, Xutao, Fang, Chuanfa, Xu, Caiming, Zhang, Jing
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9006078/
https://www.ncbi.nlm.nih.gov/pubmed/35434132
http://dx.doi.org/10.1155/2022/8219701
_version_ 1784686595616538624
author Liu, Siyao
Wang, Zhengjian
Ntim, Michael
Han, Jingrun
Jiang, Xutao
Fang, Chuanfa
Xu, Caiming
Zhang, Jing
author_facet Liu, Siyao
Wang, Zhengjian
Ntim, Michael
Han, Jingrun
Jiang, Xutao
Fang, Chuanfa
Xu, Caiming
Zhang, Jing
author_sort Liu, Siyao
collection PubMed
description Colorectal cancer is the third most common cancer and the second leading cause of cancer-related deaths. Immune cells in the tumor microenvironment play an important role in the development of tumors. In this study, CIBERSORT was used to estimate the subset of the immune cells using bulk gene expression data (i.e., TCGA, GEO, and cBioPortal databases). 1,087 samples were included in the analysis. The results revealed that among the 22 immune cell subsets that were evaluated, resting and activated NK cells, macrophage M1 and M2, and resting mast cells are associated with significant improvements in patient survival of colorectal cancer. The 15-year survival rates for the training cohort showed 49.1% and 32.5%, respectively, for the low- and high-risk groups. Likewise, the validation and entire cohorts showed 77.3% versus 47.2% and 65.3% versus 46.5%, respectively, for the low- and high-risk groups. Also, the prognostic immune score in predicting the chemotherapy effects showed that the low-risk group had a better survival superiority over the high-risk group, whether patients received chemotherapy or not. The gene set enrichment analysis showed that the low-risk group was highly enriched in pathways or processes related to immune response. The immune checkpoint assessment revealed significantly higher mRNA expressions of CTLA4 in the lower risk group than in the higher risk group. Altogether, this study offers information that could improve the prognosis of colorectal cancer.
format Online
Article
Text
id pubmed-9006078
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Hindawi
record_format MEDLINE/PubMed
spelling pubmed-90060782022-04-14 Prediction of Survival Rate and Chemotherapy Effect by an Immune Score Model in Colorectal Cancer Liu, Siyao Wang, Zhengjian Ntim, Michael Han, Jingrun Jiang, Xutao Fang, Chuanfa Xu, Caiming Zhang, Jing Biomed Res Int Research Article Colorectal cancer is the third most common cancer and the second leading cause of cancer-related deaths. Immune cells in the tumor microenvironment play an important role in the development of tumors. In this study, CIBERSORT was used to estimate the subset of the immune cells using bulk gene expression data (i.e., TCGA, GEO, and cBioPortal databases). 1,087 samples were included in the analysis. The results revealed that among the 22 immune cell subsets that were evaluated, resting and activated NK cells, macrophage M1 and M2, and resting mast cells are associated with significant improvements in patient survival of colorectal cancer. The 15-year survival rates for the training cohort showed 49.1% and 32.5%, respectively, for the low- and high-risk groups. Likewise, the validation and entire cohorts showed 77.3% versus 47.2% and 65.3% versus 46.5%, respectively, for the low- and high-risk groups. Also, the prognostic immune score in predicting the chemotherapy effects showed that the low-risk group had a better survival superiority over the high-risk group, whether patients received chemotherapy or not. The gene set enrichment analysis showed that the low-risk group was highly enriched in pathways or processes related to immune response. The immune checkpoint assessment revealed significantly higher mRNA expressions of CTLA4 in the lower risk group than in the higher risk group. Altogether, this study offers information that could improve the prognosis of colorectal cancer. Hindawi 2022-04-04 /pmc/articles/PMC9006078/ /pubmed/35434132 http://dx.doi.org/10.1155/2022/8219701 Text en Copyright © 2022 Siyao Liu et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Liu, Siyao
Wang, Zhengjian
Ntim, Michael
Han, Jingrun
Jiang, Xutao
Fang, Chuanfa
Xu, Caiming
Zhang, Jing
Prediction of Survival Rate and Chemotherapy Effect by an Immune Score Model in Colorectal Cancer
title Prediction of Survival Rate and Chemotherapy Effect by an Immune Score Model in Colorectal Cancer
title_full Prediction of Survival Rate and Chemotherapy Effect by an Immune Score Model in Colorectal Cancer
title_fullStr Prediction of Survival Rate and Chemotherapy Effect by an Immune Score Model in Colorectal Cancer
title_full_unstemmed Prediction of Survival Rate and Chemotherapy Effect by an Immune Score Model in Colorectal Cancer
title_short Prediction of Survival Rate and Chemotherapy Effect by an Immune Score Model in Colorectal Cancer
title_sort prediction of survival rate and chemotherapy effect by an immune score model in colorectal cancer
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9006078/
https://www.ncbi.nlm.nih.gov/pubmed/35434132
http://dx.doi.org/10.1155/2022/8219701
work_keys_str_mv AT liusiyao predictionofsurvivalrateandchemotherapyeffectbyanimmunescoremodelincolorectalcancer
AT wangzhengjian predictionofsurvivalrateandchemotherapyeffectbyanimmunescoremodelincolorectalcancer
AT ntimmichael predictionofsurvivalrateandchemotherapyeffectbyanimmunescoremodelincolorectalcancer
AT hanjingrun predictionofsurvivalrateandchemotherapyeffectbyanimmunescoremodelincolorectalcancer
AT jiangxutao predictionofsurvivalrateandchemotherapyeffectbyanimmunescoremodelincolorectalcancer
AT fangchuanfa predictionofsurvivalrateandchemotherapyeffectbyanimmunescoremodelincolorectalcancer
AT xucaiming predictionofsurvivalrateandchemotherapyeffectbyanimmunescoremodelincolorectalcancer
AT zhangjing predictionofsurvivalrateandchemotherapyeffectbyanimmunescoremodelincolorectalcancer