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Ensemble-SINDy: Robust sparse model discovery in the low-data, high-noise limit, with active learning and control
Sparse model identification enables the discovery of nonlinear dynamical systems purely from data; however, this approach is sensitive to noise, especially in the low-data limit. In this work, we leverage the statistical approach of bootstrap aggregating (bagging) to robustify the sparse identificat...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Royal Society
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9006119/ https://www.ncbi.nlm.nih.gov/pubmed/35450025 http://dx.doi.org/10.1098/rspa.2021.0904 |
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author | Fasel, U. Kutz, J. N. Brunton, B. W. Brunton, S. L. |
author_facet | Fasel, U. Kutz, J. N. Brunton, B. W. Brunton, S. L. |
author_sort | Fasel, U. |
collection | PubMed |
description | Sparse model identification enables the discovery of nonlinear dynamical systems purely from data; however, this approach is sensitive to noise, especially in the low-data limit. In this work, we leverage the statistical approach of bootstrap aggregating (bagging) to robustify the sparse identification of the nonlinear dynamics (SINDy) algorithm. First, an ensemble of SINDy models is identified from subsets of limited and noisy data. The aggregate model statistics are then used to produce inclusion probabilities of the candidate functions, which enables uncertainty quantification and probabilistic forecasts. We apply this ensemble-SINDy (E-SINDy) algorithm to several synthetic and real-world datasets and demonstrate substantial improvements to the accuracy and robustness of model discovery from extremely noisy and limited data. For example, E-SINDy uncovers partial differential equations models from data with more than twice as much measurement noise as has been previously reported. Similarly, E-SINDy learns the Lotka Volterra dynamics from remarkably limited data of yearly lynx and hare pelts collected from 1900 to 1920. E-SINDy is computationally efficient, with similar scaling as standard SINDy. Finally, we show that ensemble statistics from E-SINDy can be exploited for active learning and improved model predictive control. |
format | Online Article Text |
id | pubmed-9006119 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | The Royal Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-90061192022-04-20 Ensemble-SINDy: Robust sparse model discovery in the low-data, high-noise limit, with active learning and control Fasel, U. Kutz, J. N. Brunton, B. W. Brunton, S. L. Proc Math Phys Eng Sci Research Articles Sparse model identification enables the discovery of nonlinear dynamical systems purely from data; however, this approach is sensitive to noise, especially in the low-data limit. In this work, we leverage the statistical approach of bootstrap aggregating (bagging) to robustify the sparse identification of the nonlinear dynamics (SINDy) algorithm. First, an ensemble of SINDy models is identified from subsets of limited and noisy data. The aggregate model statistics are then used to produce inclusion probabilities of the candidate functions, which enables uncertainty quantification and probabilistic forecasts. We apply this ensemble-SINDy (E-SINDy) algorithm to several synthetic and real-world datasets and demonstrate substantial improvements to the accuracy and robustness of model discovery from extremely noisy and limited data. For example, E-SINDy uncovers partial differential equations models from data with more than twice as much measurement noise as has been previously reported. Similarly, E-SINDy learns the Lotka Volterra dynamics from remarkably limited data of yearly lynx and hare pelts collected from 1900 to 1920. E-SINDy is computationally efficient, with similar scaling as standard SINDy. Finally, we show that ensemble statistics from E-SINDy can be exploited for active learning and improved model predictive control. The Royal Society 2022-04 2022-04-13 /pmc/articles/PMC9006119/ /pubmed/35450025 http://dx.doi.org/10.1098/rspa.2021.0904 Text en © 2022 The Authors. https://creativecommons.org/licenses/by/4.0/Published by the Royal Society under the terms of the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, provided the original author and source are credited. |
spellingShingle | Research Articles Fasel, U. Kutz, J. N. Brunton, B. W. Brunton, S. L. Ensemble-SINDy: Robust sparse model discovery in the low-data, high-noise limit, with active learning and control |
title | Ensemble-SINDy: Robust sparse model discovery in the low-data, high-noise limit, with active learning and control |
title_full | Ensemble-SINDy: Robust sparse model discovery in the low-data, high-noise limit, with active learning and control |
title_fullStr | Ensemble-SINDy: Robust sparse model discovery in the low-data, high-noise limit, with active learning and control |
title_full_unstemmed | Ensemble-SINDy: Robust sparse model discovery in the low-data, high-noise limit, with active learning and control |
title_short | Ensemble-SINDy: Robust sparse model discovery in the low-data, high-noise limit, with active learning and control |
title_sort | ensemble-sindy: robust sparse model discovery in the low-data, high-noise limit, with active learning and control |
topic | Research Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9006119/ https://www.ncbi.nlm.nih.gov/pubmed/35450025 http://dx.doi.org/10.1098/rspa.2021.0904 |
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