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The species chromatogram, a new graphical method to represent, characterize, and compare the ecological niches of different species

The ecological niche sensu Hutchinson is defined as the set of environmental conditions allowing a species to grow, maintain, and reproduce. This conception of the niche, which is assimilated to a p‐dimensional hypervolume, with p representing all environmental variables, has been widely applied in...

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Autores principales: Kléparski, Loïck, Beaugrand, Grégory
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9006236/
https://www.ncbi.nlm.nih.gov/pubmed/35432927
http://dx.doi.org/10.1002/ece3.8830
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author Kléparski, Loïck
Beaugrand, Grégory
author_facet Kléparski, Loïck
Beaugrand, Grégory
author_sort Kléparski, Loïck
collection PubMed
description The ecological niche sensu Hutchinson is defined as the set of environmental conditions allowing a species to grow, maintain, and reproduce. This conception of the niche, which is assimilated to a p‐dimensional hypervolume, with p representing all environmental variables, has been widely applied in ecology. However, displaying the niche hypervolume has proved challenging when more than three environmental dimensions are considered simultaneously. We propose a simple method (implemented in the specieschrom R package) that displays the full multidimensionality of the ecological niche of a species into a two‐dimensional space by means of a graphic we call species chromatogram. This method gives a graphical summary of the niche by representing together abundance gradients with respect to all environmental variables. A chromatogram enables niche optimums and breaths to be rapidly quantified, and when several chromatograms are examined (one per species), rapid comparisons can be made. From our chromatograms, we proposed a procedure that quantifies niche optimum and breadth as well as niche overlapping (index D) and the identification of the most discriminant combination of environmental variables. We apply these analyses on eight planktonic species collected by the Continuous Plankton Recorder (CPR) survey in the North Atlantic Ocean using 10 environmental variables. We display their full multidimensional niches and quantify their niche optimums and breadths along each dimension. We also compare our index D with other indices by means of hypervolume and dynRB R packages. By catching the full complexity of the niche, species chromatograms allow many different niche properties to be rapidly assessed and compared among species from niche optimums and breadths to the identification of the most relevant environmental parameters and the degree of niche overlapping among species. Species chromatograms may be seen as species’ fingerprint and may also allow a better identification of the mechanisms involved in species assembly.
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spelling pubmed-90062362022-04-15 The species chromatogram, a new graphical method to represent, characterize, and compare the ecological niches of different species Kléparski, Loïck Beaugrand, Grégory Ecol Evol Research Articles The ecological niche sensu Hutchinson is defined as the set of environmental conditions allowing a species to grow, maintain, and reproduce. This conception of the niche, which is assimilated to a p‐dimensional hypervolume, with p representing all environmental variables, has been widely applied in ecology. However, displaying the niche hypervolume has proved challenging when more than three environmental dimensions are considered simultaneously. We propose a simple method (implemented in the specieschrom R package) that displays the full multidimensionality of the ecological niche of a species into a two‐dimensional space by means of a graphic we call species chromatogram. This method gives a graphical summary of the niche by representing together abundance gradients with respect to all environmental variables. A chromatogram enables niche optimums and breaths to be rapidly quantified, and when several chromatograms are examined (one per species), rapid comparisons can be made. From our chromatograms, we proposed a procedure that quantifies niche optimum and breadth as well as niche overlapping (index D) and the identification of the most discriminant combination of environmental variables. We apply these analyses on eight planktonic species collected by the Continuous Plankton Recorder (CPR) survey in the North Atlantic Ocean using 10 environmental variables. We display their full multidimensional niches and quantify their niche optimums and breadths along each dimension. We also compare our index D with other indices by means of hypervolume and dynRB R packages. By catching the full complexity of the niche, species chromatograms allow many different niche properties to be rapidly assessed and compared among species from niche optimums and breadths to the identification of the most relevant environmental parameters and the degree of niche overlapping among species. Species chromatograms may be seen as species’ fingerprint and may also allow a better identification of the mechanisms involved in species assembly. John Wiley and Sons Inc. 2022-04-13 /pmc/articles/PMC9006236/ /pubmed/35432927 http://dx.doi.org/10.1002/ece3.8830 Text en © 2022 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Articles
Kléparski, Loïck
Beaugrand, Grégory
The species chromatogram, a new graphical method to represent, characterize, and compare the ecological niches of different species
title The species chromatogram, a new graphical method to represent, characterize, and compare the ecological niches of different species
title_full The species chromatogram, a new graphical method to represent, characterize, and compare the ecological niches of different species
title_fullStr The species chromatogram, a new graphical method to represent, characterize, and compare the ecological niches of different species
title_full_unstemmed The species chromatogram, a new graphical method to represent, characterize, and compare the ecological niches of different species
title_short The species chromatogram, a new graphical method to represent, characterize, and compare the ecological niches of different species
title_sort species chromatogram, a new graphical method to represent, characterize, and compare the ecological niches of different species
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9006236/
https://www.ncbi.nlm.nih.gov/pubmed/35432927
http://dx.doi.org/10.1002/ece3.8830
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