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An m6A-Related lncRNA Signature Predicts the Prognosis of Hepatocellular Carcinoma

Objective: The purpose of this study was to establish an N6-methylandenosine (m6A)-related long non-coding RNA (lncRNA) signature to predict the prognosis of hepatocellular carcinoma (HCC). Methods: Pearson correlation analysis was used to identify m6A-related lncRNAs. We then performed univariate C...

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Autores principales: Zhang, Zhenyu, Wang, Fangkai, Zhang, Jianlin, Zhan, Wenjing, Zhang, Gaosong, Li, Chong, Zhang, Tongyuan, Yuan, Qianqian, Chen, Jia, Guo, Manyu, Xu, Honghai, Yu, Feng, Wang, Hengyi, Wang, Xingyu, Kong, Weihao
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9006777/
https://www.ncbi.nlm.nih.gov/pubmed/35431958
http://dx.doi.org/10.3389/fphar.2022.854851
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author Zhang, Zhenyu
Wang, Fangkai
Zhang, Jianlin
Zhan, Wenjing
Zhang, Gaosong
Li, Chong
Zhang, Tongyuan
Yuan, Qianqian
Chen, Jia
Guo, Manyu
Xu, Honghai
Yu, Feng
Wang, Hengyi
Wang, Xingyu
Kong, Weihao
author_facet Zhang, Zhenyu
Wang, Fangkai
Zhang, Jianlin
Zhan, Wenjing
Zhang, Gaosong
Li, Chong
Zhang, Tongyuan
Yuan, Qianqian
Chen, Jia
Guo, Manyu
Xu, Honghai
Yu, Feng
Wang, Hengyi
Wang, Xingyu
Kong, Weihao
author_sort Zhang, Zhenyu
collection PubMed
description Objective: The purpose of this study was to establish an N6-methylandenosine (m6A)-related long non-coding RNA (lncRNA) signature to predict the prognosis of hepatocellular carcinoma (HCC). Methods: Pearson correlation analysis was used to identify m6A-related lncRNAs. We then performed univariate Cox regression analysis and least absolute shrinkage and selection operator (LASSO) Cox regression analysis to construct an m6A-related lncRNA signature. Based on the cutoff value of the risk score determined by the X-title software, we divided the HCC patients into high -and low-risk groups. A time-dependent ROC curve was used to evaluate the predictive value of the model. Finally, we constructed a nomogram based on the m6A-related lncRNA signature. Results: ZEB1-AS1, MIR210HG, BACE1-AS, and SNHG3 were identified to comprise an m6A-related lncRNA signature. These four lncRNAs were upregulated in HCC tissues compared to normal tissues. The prognosis of patients with HCC in the low-risk group was significantly longer than that in the high-risk group. The M6A-related lncRNA signature was significantly associated with clinicopathological features and was established as a risk factor for the prognosis of patients with HCC. The nomogram based on the m6A-related lncRNA signature had a good distinguishing ability and consistency. Conclusion: We identified an m6A-related lncRNA signature and constructed a nomogram model to evaluate the prognosis of patients with HCC.
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spelling pubmed-90067772022-04-14 An m6A-Related lncRNA Signature Predicts the Prognosis of Hepatocellular Carcinoma Zhang, Zhenyu Wang, Fangkai Zhang, Jianlin Zhan, Wenjing Zhang, Gaosong Li, Chong Zhang, Tongyuan Yuan, Qianqian Chen, Jia Guo, Manyu Xu, Honghai Yu, Feng Wang, Hengyi Wang, Xingyu Kong, Weihao Front Pharmacol Pharmacology Objective: The purpose of this study was to establish an N6-methylandenosine (m6A)-related long non-coding RNA (lncRNA) signature to predict the prognosis of hepatocellular carcinoma (HCC). Methods: Pearson correlation analysis was used to identify m6A-related lncRNAs. We then performed univariate Cox regression analysis and least absolute shrinkage and selection operator (LASSO) Cox regression analysis to construct an m6A-related lncRNA signature. Based on the cutoff value of the risk score determined by the X-title software, we divided the HCC patients into high -and low-risk groups. A time-dependent ROC curve was used to evaluate the predictive value of the model. Finally, we constructed a nomogram based on the m6A-related lncRNA signature. Results: ZEB1-AS1, MIR210HG, BACE1-AS, and SNHG3 were identified to comprise an m6A-related lncRNA signature. These four lncRNAs were upregulated in HCC tissues compared to normal tissues. The prognosis of patients with HCC in the low-risk group was significantly longer than that in the high-risk group. The M6A-related lncRNA signature was significantly associated with clinicopathological features and was established as a risk factor for the prognosis of patients with HCC. The nomogram based on the m6A-related lncRNA signature had a good distinguishing ability and consistency. Conclusion: We identified an m6A-related lncRNA signature and constructed a nomogram model to evaluate the prognosis of patients with HCC. Frontiers Media S.A. 2022-03-30 /pmc/articles/PMC9006777/ /pubmed/35431958 http://dx.doi.org/10.3389/fphar.2022.854851 Text en Copyright © 2022 Zhang, Wang, Zhang, Zhan, Zhang, Li, Zhang, Yuan, Chen, Guo, Xu, Yu, Wang, Wang and Kong. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Pharmacology
Zhang, Zhenyu
Wang, Fangkai
Zhang, Jianlin
Zhan, Wenjing
Zhang, Gaosong
Li, Chong
Zhang, Tongyuan
Yuan, Qianqian
Chen, Jia
Guo, Manyu
Xu, Honghai
Yu, Feng
Wang, Hengyi
Wang, Xingyu
Kong, Weihao
An m6A-Related lncRNA Signature Predicts the Prognosis of Hepatocellular Carcinoma
title An m6A-Related lncRNA Signature Predicts the Prognosis of Hepatocellular Carcinoma
title_full An m6A-Related lncRNA Signature Predicts the Prognosis of Hepatocellular Carcinoma
title_fullStr An m6A-Related lncRNA Signature Predicts the Prognosis of Hepatocellular Carcinoma
title_full_unstemmed An m6A-Related lncRNA Signature Predicts the Prognosis of Hepatocellular Carcinoma
title_short An m6A-Related lncRNA Signature Predicts the Prognosis of Hepatocellular Carcinoma
title_sort m6a-related lncrna signature predicts the prognosis of hepatocellular carcinoma
topic Pharmacology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9006777/
https://www.ncbi.nlm.nih.gov/pubmed/35431958
http://dx.doi.org/10.3389/fphar.2022.854851
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