Cargando…
An m6A-Related lncRNA Signature Predicts the Prognosis of Hepatocellular Carcinoma
Objective: The purpose of this study was to establish an N6-methylandenosine (m6A)-related long non-coding RNA (lncRNA) signature to predict the prognosis of hepatocellular carcinoma (HCC). Methods: Pearson correlation analysis was used to identify m6A-related lncRNAs. We then performed univariate C...
Autores principales: | , , , , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9006777/ https://www.ncbi.nlm.nih.gov/pubmed/35431958 http://dx.doi.org/10.3389/fphar.2022.854851 |
_version_ | 1784686732551127040 |
---|---|
author | Zhang, Zhenyu Wang, Fangkai Zhang, Jianlin Zhan, Wenjing Zhang, Gaosong Li, Chong Zhang, Tongyuan Yuan, Qianqian Chen, Jia Guo, Manyu Xu, Honghai Yu, Feng Wang, Hengyi Wang, Xingyu Kong, Weihao |
author_facet | Zhang, Zhenyu Wang, Fangkai Zhang, Jianlin Zhan, Wenjing Zhang, Gaosong Li, Chong Zhang, Tongyuan Yuan, Qianqian Chen, Jia Guo, Manyu Xu, Honghai Yu, Feng Wang, Hengyi Wang, Xingyu Kong, Weihao |
author_sort | Zhang, Zhenyu |
collection | PubMed |
description | Objective: The purpose of this study was to establish an N6-methylandenosine (m6A)-related long non-coding RNA (lncRNA) signature to predict the prognosis of hepatocellular carcinoma (HCC). Methods: Pearson correlation analysis was used to identify m6A-related lncRNAs. We then performed univariate Cox regression analysis and least absolute shrinkage and selection operator (LASSO) Cox regression analysis to construct an m6A-related lncRNA signature. Based on the cutoff value of the risk score determined by the X-title software, we divided the HCC patients into high -and low-risk groups. A time-dependent ROC curve was used to evaluate the predictive value of the model. Finally, we constructed a nomogram based on the m6A-related lncRNA signature. Results: ZEB1-AS1, MIR210HG, BACE1-AS, and SNHG3 were identified to comprise an m6A-related lncRNA signature. These four lncRNAs were upregulated in HCC tissues compared to normal tissues. The prognosis of patients with HCC in the low-risk group was significantly longer than that in the high-risk group. The M6A-related lncRNA signature was significantly associated with clinicopathological features and was established as a risk factor for the prognosis of patients with HCC. The nomogram based on the m6A-related lncRNA signature had a good distinguishing ability and consistency. Conclusion: We identified an m6A-related lncRNA signature and constructed a nomogram model to evaluate the prognosis of patients with HCC. |
format | Online Article Text |
id | pubmed-9006777 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-90067772022-04-14 An m6A-Related lncRNA Signature Predicts the Prognosis of Hepatocellular Carcinoma Zhang, Zhenyu Wang, Fangkai Zhang, Jianlin Zhan, Wenjing Zhang, Gaosong Li, Chong Zhang, Tongyuan Yuan, Qianqian Chen, Jia Guo, Manyu Xu, Honghai Yu, Feng Wang, Hengyi Wang, Xingyu Kong, Weihao Front Pharmacol Pharmacology Objective: The purpose of this study was to establish an N6-methylandenosine (m6A)-related long non-coding RNA (lncRNA) signature to predict the prognosis of hepatocellular carcinoma (HCC). Methods: Pearson correlation analysis was used to identify m6A-related lncRNAs. We then performed univariate Cox regression analysis and least absolute shrinkage and selection operator (LASSO) Cox regression analysis to construct an m6A-related lncRNA signature. Based on the cutoff value of the risk score determined by the X-title software, we divided the HCC patients into high -and low-risk groups. A time-dependent ROC curve was used to evaluate the predictive value of the model. Finally, we constructed a nomogram based on the m6A-related lncRNA signature. Results: ZEB1-AS1, MIR210HG, BACE1-AS, and SNHG3 were identified to comprise an m6A-related lncRNA signature. These four lncRNAs were upregulated in HCC tissues compared to normal tissues. The prognosis of patients with HCC in the low-risk group was significantly longer than that in the high-risk group. The M6A-related lncRNA signature was significantly associated with clinicopathological features and was established as a risk factor for the prognosis of patients with HCC. The nomogram based on the m6A-related lncRNA signature had a good distinguishing ability and consistency. Conclusion: We identified an m6A-related lncRNA signature and constructed a nomogram model to evaluate the prognosis of patients with HCC. Frontiers Media S.A. 2022-03-30 /pmc/articles/PMC9006777/ /pubmed/35431958 http://dx.doi.org/10.3389/fphar.2022.854851 Text en Copyright © 2022 Zhang, Wang, Zhang, Zhan, Zhang, Li, Zhang, Yuan, Chen, Guo, Xu, Yu, Wang, Wang and Kong. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Pharmacology Zhang, Zhenyu Wang, Fangkai Zhang, Jianlin Zhan, Wenjing Zhang, Gaosong Li, Chong Zhang, Tongyuan Yuan, Qianqian Chen, Jia Guo, Manyu Xu, Honghai Yu, Feng Wang, Hengyi Wang, Xingyu Kong, Weihao An m6A-Related lncRNA Signature Predicts the Prognosis of Hepatocellular Carcinoma |
title | An m6A-Related lncRNA Signature Predicts the Prognosis of Hepatocellular Carcinoma |
title_full | An m6A-Related lncRNA Signature Predicts the Prognosis of Hepatocellular Carcinoma |
title_fullStr | An m6A-Related lncRNA Signature Predicts the Prognosis of Hepatocellular Carcinoma |
title_full_unstemmed | An m6A-Related lncRNA Signature Predicts the Prognosis of Hepatocellular Carcinoma |
title_short | An m6A-Related lncRNA Signature Predicts the Prognosis of Hepatocellular Carcinoma |
title_sort | m6a-related lncrna signature predicts the prognosis of hepatocellular carcinoma |
topic | Pharmacology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9006777/ https://www.ncbi.nlm.nih.gov/pubmed/35431958 http://dx.doi.org/10.3389/fphar.2022.854851 |
work_keys_str_mv | AT zhangzhenyu anm6arelatedlncrnasignaturepredictstheprognosisofhepatocellularcarcinoma AT wangfangkai anm6arelatedlncrnasignaturepredictstheprognosisofhepatocellularcarcinoma AT zhangjianlin anm6arelatedlncrnasignaturepredictstheprognosisofhepatocellularcarcinoma AT zhanwenjing anm6arelatedlncrnasignaturepredictstheprognosisofhepatocellularcarcinoma AT zhanggaosong anm6arelatedlncrnasignaturepredictstheprognosisofhepatocellularcarcinoma AT lichong anm6arelatedlncrnasignaturepredictstheprognosisofhepatocellularcarcinoma AT zhangtongyuan anm6arelatedlncrnasignaturepredictstheprognosisofhepatocellularcarcinoma AT yuanqianqian anm6arelatedlncrnasignaturepredictstheprognosisofhepatocellularcarcinoma AT chenjia anm6arelatedlncrnasignaturepredictstheprognosisofhepatocellularcarcinoma AT guomanyu anm6arelatedlncrnasignaturepredictstheprognosisofhepatocellularcarcinoma AT xuhonghai anm6arelatedlncrnasignaturepredictstheprognosisofhepatocellularcarcinoma AT yufeng anm6arelatedlncrnasignaturepredictstheprognosisofhepatocellularcarcinoma AT wanghengyi anm6arelatedlncrnasignaturepredictstheprognosisofhepatocellularcarcinoma AT wangxingyu anm6arelatedlncrnasignaturepredictstheprognosisofhepatocellularcarcinoma AT kongweihao anm6arelatedlncrnasignaturepredictstheprognosisofhepatocellularcarcinoma AT zhangzhenyu m6arelatedlncrnasignaturepredictstheprognosisofhepatocellularcarcinoma AT wangfangkai m6arelatedlncrnasignaturepredictstheprognosisofhepatocellularcarcinoma AT zhangjianlin m6arelatedlncrnasignaturepredictstheprognosisofhepatocellularcarcinoma AT zhanwenjing m6arelatedlncrnasignaturepredictstheprognosisofhepatocellularcarcinoma AT zhanggaosong m6arelatedlncrnasignaturepredictstheprognosisofhepatocellularcarcinoma AT lichong m6arelatedlncrnasignaturepredictstheprognosisofhepatocellularcarcinoma AT zhangtongyuan m6arelatedlncrnasignaturepredictstheprognosisofhepatocellularcarcinoma AT yuanqianqian m6arelatedlncrnasignaturepredictstheprognosisofhepatocellularcarcinoma AT chenjia m6arelatedlncrnasignaturepredictstheprognosisofhepatocellularcarcinoma AT guomanyu m6arelatedlncrnasignaturepredictstheprognosisofhepatocellularcarcinoma AT xuhonghai m6arelatedlncrnasignaturepredictstheprognosisofhepatocellularcarcinoma AT yufeng m6arelatedlncrnasignaturepredictstheprognosisofhepatocellularcarcinoma AT wanghengyi m6arelatedlncrnasignaturepredictstheprognosisofhepatocellularcarcinoma AT wangxingyu m6arelatedlncrnasignaturepredictstheprognosisofhepatocellularcarcinoma AT kongweihao m6arelatedlncrnasignaturepredictstheprognosisofhepatocellularcarcinoma |