Cargando…

Evaluating efficacy of indoor non-pharmaceutical interventions against COVID-19 outbreaks with a coupled spatial-SIR agent-based simulation framework

Contagious respiratory diseases, such as COVID-19, depend on sufficiently prolonged exposures for the successful transmission of the underlying pathogen. It is important that organizations evaluate the efficacy of non-pharmaceutical interventions aimed at mitigating viral transmission among their pe...

Descripción completa

Detalles Bibliográficos
Autores principales: Gunaratne, Chathika, Reyes, Rene, Hemberg, Erik, O’Reilly, Una-May
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9007058/
https://www.ncbi.nlm.nih.gov/pubmed/35418652
http://dx.doi.org/10.1038/s41598-022-09942-y
_version_ 1784686783713247232
author Gunaratne, Chathika
Reyes, Rene
Hemberg, Erik
O’Reilly, Una-May
author_facet Gunaratne, Chathika
Reyes, Rene
Hemberg, Erik
O’Reilly, Una-May
author_sort Gunaratne, Chathika
collection PubMed
description Contagious respiratory diseases, such as COVID-19, depend on sufficiently prolonged exposures for the successful transmission of the underlying pathogen. It is important that organizations evaluate the efficacy of non-pharmaceutical interventions aimed at mitigating viral transmission among their personnel. We have developed a operational risk assessment simulation framework that couples a spatial agent-based model of movement with an agent-based SIR model to assess the relative risks of different intervention strategies. By applying our model on MIT’s Stata center, we assess the impacts of three possible dimensions of intervention: one-way vs unrestricted movement, population size allowed onsite, and frequency of leaving designated work location for breaks. We find that there is no significant impact made by one-way movement restrictions over unrestricted movement. Instead, we find that reducing the frequency at which individuals leave their workstations combined with lowering the number of individuals admitted below the current recommendations lowers the likelihood of highly connected individuals within the contact networks that emerge, which in turn lowers the overall risk of infection. We discover three classes of possible interventions based on their epidemiological effects. By assuming a direct relationship between data on secondary attack rates and transmissibility in the agent-based SIR model, we compare relative infection risk of four respiratory illnesses, MERS, SARS, COVID-19, and Measles, within the simulated area, and recommend appropriate intervention guidelines.
format Online
Article
Text
id pubmed-9007058
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-90070582022-04-14 Evaluating efficacy of indoor non-pharmaceutical interventions against COVID-19 outbreaks with a coupled spatial-SIR agent-based simulation framework Gunaratne, Chathika Reyes, Rene Hemberg, Erik O’Reilly, Una-May Sci Rep Article Contagious respiratory diseases, such as COVID-19, depend on sufficiently prolonged exposures for the successful transmission of the underlying pathogen. It is important that organizations evaluate the efficacy of non-pharmaceutical interventions aimed at mitigating viral transmission among their personnel. We have developed a operational risk assessment simulation framework that couples a spatial agent-based model of movement with an agent-based SIR model to assess the relative risks of different intervention strategies. By applying our model on MIT’s Stata center, we assess the impacts of three possible dimensions of intervention: one-way vs unrestricted movement, population size allowed onsite, and frequency of leaving designated work location for breaks. We find that there is no significant impact made by one-way movement restrictions over unrestricted movement. Instead, we find that reducing the frequency at which individuals leave their workstations combined with lowering the number of individuals admitted below the current recommendations lowers the likelihood of highly connected individuals within the contact networks that emerge, which in turn lowers the overall risk of infection. We discover three classes of possible interventions based on their epidemiological effects. By assuming a direct relationship between data on secondary attack rates and transmissibility in the agent-based SIR model, we compare relative infection risk of four respiratory illnesses, MERS, SARS, COVID-19, and Measles, within the simulated area, and recommend appropriate intervention guidelines. Nature Publishing Group UK 2022-04-13 /pmc/articles/PMC9007058/ /pubmed/35418652 http://dx.doi.org/10.1038/s41598-022-09942-y Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Gunaratne, Chathika
Reyes, Rene
Hemberg, Erik
O’Reilly, Una-May
Evaluating efficacy of indoor non-pharmaceutical interventions against COVID-19 outbreaks with a coupled spatial-SIR agent-based simulation framework
title Evaluating efficacy of indoor non-pharmaceutical interventions against COVID-19 outbreaks with a coupled spatial-SIR agent-based simulation framework
title_full Evaluating efficacy of indoor non-pharmaceutical interventions against COVID-19 outbreaks with a coupled spatial-SIR agent-based simulation framework
title_fullStr Evaluating efficacy of indoor non-pharmaceutical interventions against COVID-19 outbreaks with a coupled spatial-SIR agent-based simulation framework
title_full_unstemmed Evaluating efficacy of indoor non-pharmaceutical interventions against COVID-19 outbreaks with a coupled spatial-SIR agent-based simulation framework
title_short Evaluating efficacy of indoor non-pharmaceutical interventions against COVID-19 outbreaks with a coupled spatial-SIR agent-based simulation framework
title_sort evaluating efficacy of indoor non-pharmaceutical interventions against covid-19 outbreaks with a coupled spatial-sir agent-based simulation framework
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9007058/
https://www.ncbi.nlm.nih.gov/pubmed/35418652
http://dx.doi.org/10.1038/s41598-022-09942-y
work_keys_str_mv AT gunaratnechathika evaluatingefficacyofindoornonpharmaceuticalinterventionsagainstcovid19outbreakswithacoupledspatialsiragentbasedsimulationframework
AT reyesrene evaluatingefficacyofindoornonpharmaceuticalinterventionsagainstcovid19outbreakswithacoupledspatialsiragentbasedsimulationframework
AT hembergerik evaluatingefficacyofindoornonpharmaceuticalinterventionsagainstcovid19outbreakswithacoupledspatialsiragentbasedsimulationframework
AT oreillyunamay evaluatingefficacyofindoornonpharmaceuticalinterventionsagainstcovid19outbreakswithacoupledspatialsiragentbasedsimulationframework