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Cleaving Method for Molecular Crystals and Its Application to Calculation of the Surface Free Energy of Crystalline β-d-Mannitol at Room Temperature
[Image: see text] Calculation of the surface free energy (SFE) is an important application of the thermodynamic integration (TI) methodology, which was mainly employed for atomic crystals (such as Lennard–Jones or metals). In this work, we present the calculation of the SFE of a molecular crystal us...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2022
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9007450/ https://www.ncbi.nlm.nih.gov/pubmed/35324191 http://dx.doi.org/10.1021/acs.jpca.2c00604 |
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author | Di Pasquale, Nicodemo Davidchack, Ruslan L. |
author_facet | Di Pasquale, Nicodemo Davidchack, Ruslan L. |
author_sort | Di Pasquale, Nicodemo |
collection | PubMed |
description | [Image: see text] Calculation of the surface free energy (SFE) is an important application of the thermodynamic integration (TI) methodology, which was mainly employed for atomic crystals (such as Lennard–Jones or metals). In this work, we present the calculation of the SFE of a molecular crystal using the cleaving technique which we implemented in the LAMMPS molecular dynamics package. We apply this methodology to a crystal of β-d-mannitol at room temperature and report the results for two types of force fields belonging to the GROMOS family: all atoms and united atoms. The results show strong dependence on the type of force field used, highlighting the need for the development of better force fields to model the surface properties of molecular crystals. In particular, we observe that the united-atoms force field, despite its higher degree of coarse graining compared to the all-atoms force field, produces SFE results in better agreement with the experimental results from inverse gas chromatography measurements. |
format | Online Article Text |
id | pubmed-9007450 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-90074502022-04-14 Cleaving Method for Molecular Crystals and Its Application to Calculation of the Surface Free Energy of Crystalline β-d-Mannitol at Room Temperature Di Pasquale, Nicodemo Davidchack, Ruslan L. J Phys Chem A [Image: see text] Calculation of the surface free energy (SFE) is an important application of the thermodynamic integration (TI) methodology, which was mainly employed for atomic crystals (such as Lennard–Jones or metals). In this work, we present the calculation of the SFE of a molecular crystal using the cleaving technique which we implemented in the LAMMPS molecular dynamics package. We apply this methodology to a crystal of β-d-mannitol at room temperature and report the results for two types of force fields belonging to the GROMOS family: all atoms and united atoms. The results show strong dependence on the type of force field used, highlighting the need for the development of better force fields to model the surface properties of molecular crystals. In particular, we observe that the united-atoms force field, despite its higher degree of coarse graining compared to the all-atoms force field, produces SFE results in better agreement with the experimental results from inverse gas chromatography measurements. American Chemical Society 2022-03-24 2022-04-07 /pmc/articles/PMC9007450/ /pubmed/35324191 http://dx.doi.org/10.1021/acs.jpca.2c00604 Text en © 2022 American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Di Pasquale, Nicodemo Davidchack, Ruslan L. Cleaving Method for Molecular Crystals and Its Application to Calculation of the Surface Free Energy of Crystalline β-d-Mannitol at Room Temperature |
title | Cleaving Method for Molecular Crystals and Its Application
to Calculation of the Surface Free Energy of Crystalline β-d-Mannitol at Room Temperature |
title_full | Cleaving Method for Molecular Crystals and Its Application
to Calculation of the Surface Free Energy of Crystalline β-d-Mannitol at Room Temperature |
title_fullStr | Cleaving Method for Molecular Crystals and Its Application
to Calculation of the Surface Free Energy of Crystalline β-d-Mannitol at Room Temperature |
title_full_unstemmed | Cleaving Method for Molecular Crystals and Its Application
to Calculation of the Surface Free Energy of Crystalline β-d-Mannitol at Room Temperature |
title_short | Cleaving Method for Molecular Crystals and Its Application
to Calculation of the Surface Free Energy of Crystalline β-d-Mannitol at Room Temperature |
title_sort | cleaving method for molecular crystals and its application
to calculation of the surface free energy of crystalline β-d-mannitol at room temperature |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9007450/ https://www.ncbi.nlm.nih.gov/pubmed/35324191 http://dx.doi.org/10.1021/acs.jpca.2c00604 |
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