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A draft genome of Drung cattle reveals clues to its chromosomal fusion and environmental adaptation

Drung cattle (Bos frontalis) have 58 chromosomes, differing from the Bos taurus 2n = 60 karyotype. To date, its origin and evolution history have not been proven conclusively, and the mechanisms of chromosome fusion and environmental adaptation have not been clearly elucidated. Here, we assembled a...

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Autores principales: Chen, Yan, Zhang, Tianliu, Xian, Ming, Zhang, Rui, Yang, Weifei, Su, Baqi, Yang, Guoqiang, Sun, Limin, Xu, Wenkun, Xu, Shangzhong, Gao, Huijiang, Xu, Lingyang, Gao, Xue, Li, Junya
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9008013/
https://www.ncbi.nlm.nih.gov/pubmed/35418663
http://dx.doi.org/10.1038/s42003-022-03298-9
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author Chen, Yan
Zhang, Tianliu
Xian, Ming
Zhang, Rui
Yang, Weifei
Su, Baqi
Yang, Guoqiang
Sun, Limin
Xu, Wenkun
Xu, Shangzhong
Gao, Huijiang
Xu, Lingyang
Gao, Xue
Li, Junya
author_facet Chen, Yan
Zhang, Tianliu
Xian, Ming
Zhang, Rui
Yang, Weifei
Su, Baqi
Yang, Guoqiang
Sun, Limin
Xu, Wenkun
Xu, Shangzhong
Gao, Huijiang
Xu, Lingyang
Gao, Xue
Li, Junya
author_sort Chen, Yan
collection PubMed
description Drung cattle (Bos frontalis) have 58 chromosomes, differing from the Bos taurus 2n = 60 karyotype. To date, its origin and evolution history have not been proven conclusively, and the mechanisms of chromosome fusion and environmental adaptation have not been clearly elucidated. Here, we assembled a high integrity and good contiguity genome of Drung cattle with 13.7-fold contig N50 and 4.1-fold scaffold N50 improvements over the recently published Indian mithun assembly, respectively. Speciation time estimation and phylogenetic analysis showed that Drung cattle diverged from Bos taurus into an independent evolutionary clade. Sequence evidence of centromere regions provides clues to the breakpoints in BTA2 and BTA28 centromere satellites. We furthermore integrated a circulation and contraction-related biological process involving 43 evolutionary genes that participated in pathways associated with the evolution of the cardiovascular system. These findings may have important implications for understanding the molecular mechanisms of chromosome fusion, alpine valleys adaptability and cardiovascular function.
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spelling pubmed-90080132022-04-27 A draft genome of Drung cattle reveals clues to its chromosomal fusion and environmental adaptation Chen, Yan Zhang, Tianliu Xian, Ming Zhang, Rui Yang, Weifei Su, Baqi Yang, Guoqiang Sun, Limin Xu, Wenkun Xu, Shangzhong Gao, Huijiang Xu, Lingyang Gao, Xue Li, Junya Commun Biol Article Drung cattle (Bos frontalis) have 58 chromosomes, differing from the Bos taurus 2n = 60 karyotype. To date, its origin and evolution history have not been proven conclusively, and the mechanisms of chromosome fusion and environmental adaptation have not been clearly elucidated. Here, we assembled a high integrity and good contiguity genome of Drung cattle with 13.7-fold contig N50 and 4.1-fold scaffold N50 improvements over the recently published Indian mithun assembly, respectively. Speciation time estimation and phylogenetic analysis showed that Drung cattle diverged from Bos taurus into an independent evolutionary clade. Sequence evidence of centromere regions provides clues to the breakpoints in BTA2 and BTA28 centromere satellites. We furthermore integrated a circulation and contraction-related biological process involving 43 evolutionary genes that participated in pathways associated with the evolution of the cardiovascular system. These findings may have important implications for understanding the molecular mechanisms of chromosome fusion, alpine valleys adaptability and cardiovascular function. Nature Publishing Group UK 2022-04-13 /pmc/articles/PMC9008013/ /pubmed/35418663 http://dx.doi.org/10.1038/s42003-022-03298-9 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Chen, Yan
Zhang, Tianliu
Xian, Ming
Zhang, Rui
Yang, Weifei
Su, Baqi
Yang, Guoqiang
Sun, Limin
Xu, Wenkun
Xu, Shangzhong
Gao, Huijiang
Xu, Lingyang
Gao, Xue
Li, Junya
A draft genome of Drung cattle reveals clues to its chromosomal fusion and environmental adaptation
title A draft genome of Drung cattle reveals clues to its chromosomal fusion and environmental adaptation
title_full A draft genome of Drung cattle reveals clues to its chromosomal fusion and environmental adaptation
title_fullStr A draft genome of Drung cattle reveals clues to its chromosomal fusion and environmental adaptation
title_full_unstemmed A draft genome of Drung cattle reveals clues to its chromosomal fusion and environmental adaptation
title_short A draft genome of Drung cattle reveals clues to its chromosomal fusion and environmental adaptation
title_sort draft genome of drung cattle reveals clues to its chromosomal fusion and environmental adaptation
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9008013/
https://www.ncbi.nlm.nih.gov/pubmed/35418663
http://dx.doi.org/10.1038/s42003-022-03298-9
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