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Establishment and Optimization of Radiomics Algorithms for Prediction of KRAS Gene Mutation by Integration of NSCLC Gene Mutation Mutual Exclusion Information

Purpose: To assess the significance of mutation mutual exclusion information in the optimization of radiomics algorithms for predicting gene mutation. Methods: We retrospectively analyzed 258 non-small cell lung cancer (NSCLC) patients. Patients were randomly divided into training (n = 180) and vali...

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Autores principales: Wang, Jingyi, Lv, Xing, Huang, Weicheng, Quan, Zhiyong, Li, Guiyu, Wu, Shuo, Wang, Yirong, Xie, Zhaojuan, Yan, Yuhao, Li, Xiang, Ma, Wenhui, Yang, Weidong, Cao, Xin, Kang, Fei, Wang, Jing
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9010886/
https://www.ncbi.nlm.nih.gov/pubmed/35431943
http://dx.doi.org/10.3389/fphar.2022.862581
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author Wang, Jingyi
Lv, Xing
Huang, Weicheng
Quan, Zhiyong
Li, Guiyu
Wu, Shuo
Wang, Yirong
Xie, Zhaojuan
Yan, Yuhao
Li, Xiang
Ma, Wenhui
Yang, Weidong
Cao, Xin
Kang, Fei
Wang, Jing
author_facet Wang, Jingyi
Lv, Xing
Huang, Weicheng
Quan, Zhiyong
Li, Guiyu
Wu, Shuo
Wang, Yirong
Xie, Zhaojuan
Yan, Yuhao
Li, Xiang
Ma, Wenhui
Yang, Weidong
Cao, Xin
Kang, Fei
Wang, Jing
author_sort Wang, Jingyi
collection PubMed
description Purpose: To assess the significance of mutation mutual exclusion information in the optimization of radiomics algorithms for predicting gene mutation. Methods: We retrospectively analyzed 258 non-small cell lung cancer (NSCLC) patients. Patients were randomly divided into training (n = 180) and validation (n = 78) cohorts. Based on radiomics features, radiomics score (RS) models were developed for predicting KRAS proto-oncogene mutations. Furthermore, a composite model combining mixedRS and epidermal growth factor receptor (EGFR) mutation status was developed. Results: Compared with CT model, the PET/CT radiomics score model exhibited higher AUC for predicting KRAS mutations (0.834 vs. 0.770). By integrating EGFR mutation information into the PET/CT RS model, the AUC, sensitivity, specificity, and accuracy for predicting KRAS mutations were all elevated in the validation cohort (0.921, 0.949, 0.872, 0.910 vs. 0.834, 0.923, 0.641, 0.782). By adding EGFR exclusive mutation information, the composite model corrected 64.3% false positive cases produced by the PET/CT RS model in the validation cohort. Conclusion: Integrating EGFR mutation status has potential utility for the optimization of radiomics models for prediction of KRAS gene mutations. This method may be used when repeated biopsies would carry unacceptable risks for the patient.
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spelling pubmed-90108862022-04-16 Establishment and Optimization of Radiomics Algorithms for Prediction of KRAS Gene Mutation by Integration of NSCLC Gene Mutation Mutual Exclusion Information Wang, Jingyi Lv, Xing Huang, Weicheng Quan, Zhiyong Li, Guiyu Wu, Shuo Wang, Yirong Xie, Zhaojuan Yan, Yuhao Li, Xiang Ma, Wenhui Yang, Weidong Cao, Xin Kang, Fei Wang, Jing Front Pharmacol Pharmacology Purpose: To assess the significance of mutation mutual exclusion information in the optimization of radiomics algorithms for predicting gene mutation. Methods: We retrospectively analyzed 258 non-small cell lung cancer (NSCLC) patients. Patients were randomly divided into training (n = 180) and validation (n = 78) cohorts. Based on radiomics features, radiomics score (RS) models were developed for predicting KRAS proto-oncogene mutations. Furthermore, a composite model combining mixedRS and epidermal growth factor receptor (EGFR) mutation status was developed. Results: Compared with CT model, the PET/CT radiomics score model exhibited higher AUC for predicting KRAS mutations (0.834 vs. 0.770). By integrating EGFR mutation information into the PET/CT RS model, the AUC, sensitivity, specificity, and accuracy for predicting KRAS mutations were all elevated in the validation cohort (0.921, 0.949, 0.872, 0.910 vs. 0.834, 0.923, 0.641, 0.782). By adding EGFR exclusive mutation information, the composite model corrected 64.3% false positive cases produced by the PET/CT RS model in the validation cohort. Conclusion: Integrating EGFR mutation status has potential utility for the optimization of radiomics models for prediction of KRAS gene mutations. This method may be used when repeated biopsies would carry unacceptable risks for the patient. Frontiers Media S.A. 2022-04-01 /pmc/articles/PMC9010886/ /pubmed/35431943 http://dx.doi.org/10.3389/fphar.2022.862581 Text en Copyright © 2022 Wang, Lv, Huang, Quan, Li, Wu, Wang, Xie, Yan, Li, Ma, Yang, Cao, Kang and Wang. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Pharmacology
Wang, Jingyi
Lv, Xing
Huang, Weicheng
Quan, Zhiyong
Li, Guiyu
Wu, Shuo
Wang, Yirong
Xie, Zhaojuan
Yan, Yuhao
Li, Xiang
Ma, Wenhui
Yang, Weidong
Cao, Xin
Kang, Fei
Wang, Jing
Establishment and Optimization of Radiomics Algorithms for Prediction of KRAS Gene Mutation by Integration of NSCLC Gene Mutation Mutual Exclusion Information
title Establishment and Optimization of Radiomics Algorithms for Prediction of KRAS Gene Mutation by Integration of NSCLC Gene Mutation Mutual Exclusion Information
title_full Establishment and Optimization of Radiomics Algorithms for Prediction of KRAS Gene Mutation by Integration of NSCLC Gene Mutation Mutual Exclusion Information
title_fullStr Establishment and Optimization of Radiomics Algorithms for Prediction of KRAS Gene Mutation by Integration of NSCLC Gene Mutation Mutual Exclusion Information
title_full_unstemmed Establishment and Optimization of Radiomics Algorithms for Prediction of KRAS Gene Mutation by Integration of NSCLC Gene Mutation Mutual Exclusion Information
title_short Establishment and Optimization of Radiomics Algorithms for Prediction of KRAS Gene Mutation by Integration of NSCLC Gene Mutation Mutual Exclusion Information
title_sort establishment and optimization of radiomics algorithms for prediction of kras gene mutation by integration of nsclc gene mutation mutual exclusion information
topic Pharmacology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9010886/
https://www.ncbi.nlm.nih.gov/pubmed/35431943
http://dx.doi.org/10.3389/fphar.2022.862581
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