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An undergraduate laboratory experiment with real‐world applications: Utilizing templateless polymerase chain reaction and real‐time polymerase chain reaction to test for SARS‐CoV‐2 RNA

We present a course‐embedded undergraduate research module that involves real‐time polymerase chain reaction testing for the presence of SARS‐CoV‐2 in environmental samples. A positive control RNA was constructed and two RNA extraction methods were compared and a range of primers were available to c...

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Detalles Bibliográficos
Autores principales: Crane, Julia, Page, Shallee T.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley & Sons, Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9011848/
https://www.ncbi.nlm.nih.gov/pubmed/34862844
http://dx.doi.org/10.1002/bmb.21593
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author Crane, Julia
Page, Shallee T.
author_facet Crane, Julia
Page, Shallee T.
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description We present a course‐embedded undergraduate research module that involves real‐time polymerase chain reaction testing for the presence of SARS‐CoV‐2 in environmental samples. A positive control RNA was constructed and two RNA extraction methods were compared and a range of primers were available to compare. Using a combination of published protocols, we assembled a successful project that illustrated a topical exercise similar to real‐world assay development. The exercise is aimed at upper‐level undergraduates and requires 3 weeks of laboratory periods. The students were able to design and test experimental protocols, while learning about RNA detection. This project could be utilized in upper‐level classes including molecular biology, biochemistry, biotechnology, or for independent research projects.
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spelling pubmed-90118482022-04-15 An undergraduate laboratory experiment with real‐world applications: Utilizing templateless polymerase chain reaction and real‐time polymerase chain reaction to test for SARS‐CoV‐2 RNA Crane, Julia Page, Shallee T. Biochem Mol Biol Educ Laboratory Exercises We present a course‐embedded undergraduate research module that involves real‐time polymerase chain reaction testing for the presence of SARS‐CoV‐2 in environmental samples. A positive control RNA was constructed and two RNA extraction methods were compared and a range of primers were available to compare. Using a combination of published protocols, we assembled a successful project that illustrated a topical exercise similar to real‐world assay development. The exercise is aimed at upper‐level undergraduates and requires 3 weeks of laboratory periods. The students were able to design and test experimental protocols, while learning about RNA detection. This project could be utilized in upper‐level classes including molecular biology, biochemistry, biotechnology, or for independent research projects. John Wiley & Sons, Inc. 2021-12-04 2022 /pmc/articles/PMC9011848/ /pubmed/34862844 http://dx.doi.org/10.1002/bmb.21593 Text en © 2021 The Authors. Biochemistry and Molecular Biology Education published by Wiley Periodicals LLC on behalf of International Union of Biochemistry and Molecular Biology https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Laboratory Exercises
Crane, Julia
Page, Shallee T.
An undergraduate laboratory experiment with real‐world applications: Utilizing templateless polymerase chain reaction and real‐time polymerase chain reaction to test for SARS‐CoV‐2 RNA
title An undergraduate laboratory experiment with real‐world applications: Utilizing templateless polymerase chain reaction and real‐time polymerase chain reaction to test for SARS‐CoV‐2 RNA
title_full An undergraduate laboratory experiment with real‐world applications: Utilizing templateless polymerase chain reaction and real‐time polymerase chain reaction to test for SARS‐CoV‐2 RNA
title_fullStr An undergraduate laboratory experiment with real‐world applications: Utilizing templateless polymerase chain reaction and real‐time polymerase chain reaction to test for SARS‐CoV‐2 RNA
title_full_unstemmed An undergraduate laboratory experiment with real‐world applications: Utilizing templateless polymerase chain reaction and real‐time polymerase chain reaction to test for SARS‐CoV‐2 RNA
title_short An undergraduate laboratory experiment with real‐world applications: Utilizing templateless polymerase chain reaction and real‐time polymerase chain reaction to test for SARS‐CoV‐2 RNA
title_sort undergraduate laboratory experiment with real‐world applications: utilizing templateless polymerase chain reaction and real‐time polymerase chain reaction to test for sars‐cov‐2 rna
topic Laboratory Exercises
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9011848/
https://www.ncbi.nlm.nih.gov/pubmed/34862844
http://dx.doi.org/10.1002/bmb.21593
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